Atomistry » Zinc » PDB 1xmo-1xur » 1xso
Atomistry »
  Zinc »
    PDB 1xmo-1xur »
      1xso »

Zinc in PDB 1xso: Three-Dimensional Structure of Xenopus Laevis Cu,Zn Superoxide Dismutase B Determined By X-Ray Crystallography at 1.5 Angstroms Resolution

Enzymatic activity of Three-Dimensional Structure of Xenopus Laevis Cu,Zn Superoxide Dismutase B Determined By X-Ray Crystallography at 1.5 Angstroms Resolution

All present enzymatic activity of Three-Dimensional Structure of Xenopus Laevis Cu,Zn Superoxide Dismutase B Determined By X-Ray Crystallography at 1.5 Angstroms Resolution:
1.15.1.1;

Protein crystallography data

The structure of Three-Dimensional Structure of Xenopus Laevis Cu,Zn Superoxide Dismutase B Determined By X-Ray Crystallography at 1.5 Angstroms Resolution, PDB code: 1xso was solved by K.Djinovic Carugo, A.Coda, A.Battistoni, M.T.Carri, F.Polticelli, A.Desideri, G.Rotilio, K.S.Wilson, M.Bolognesi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.49
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 73.450, 68.940, 58.760, 90.00, 90.00, 90.00
R / Rfree (%) 10.4 / 16.9

Other elements in 1xso:

The structure of Three-Dimensional Structure of Xenopus Laevis Cu,Zn Superoxide Dismutase B Determined By X-Ray Crystallography at 1.5 Angstroms Resolution also contains other interesting chemical elements:

Copper (Cu) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Three-Dimensional Structure of Xenopus Laevis Cu,Zn Superoxide Dismutase B Determined By X-Ray Crystallography at 1.5 Angstroms Resolution (pdb code 1xso). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Three-Dimensional Structure of Xenopus Laevis Cu,Zn Superoxide Dismutase B Determined By X-Ray Crystallography at 1.5 Angstroms Resolution, PDB code: 1xso:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1xso

Go back to Zinc Binding Sites List in 1xso
Zinc binding site 1 out of 2 in the Three-Dimensional Structure of Xenopus Laevis Cu,Zn Superoxide Dismutase B Determined By X-Ray Crystallography at 1.5 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Three-Dimensional Structure of Xenopus Laevis Cu,Zn Superoxide Dismutase B Determined By X-Ray Crystallography at 1.5 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn152

b:9.3
occ:1.00
OD1 A:ASP81 2.0 8.3 1.0
ND1 A:HIS61 2.0 9.1 1.0
ND1 A:HIS78 2.1 8.4 1.0
ND1 A:HIS69 2.1 8.2 1.0
CG A:ASP81 2.8 8.5 1.0
OD2 A:ASP81 2.9 10.8 1.0
CE1 A:HIS78 2.9 9.6 1.0
CE1 A:HIS61 2.9 12.8 1.0
CE1 A:HIS69 3.0 9.1 1.0
CG A:HIS61 3.0 8.8 1.0
CG A:HIS78 3.2 9.3 1.0
CG A:HIS69 3.2 7.5 1.0
CB A:HIS61 3.5 9.4 1.0
CB A:HIS78 3.6 9.9 1.0
CB A:HIS69 3.6 11.1 1.0
O A:LYS134 3.8 11.8 1.0
CA A:HIS69 4.0 8.1 1.0
NE2 A:HIS78 4.1 11.4 1.0
NE2 A:HIS61 4.1 11.7 1.0
CD2 A:HIS61 4.1 11.1 1.0
NE2 A:HIS69 4.1 10.9 1.0
CB A:ASP81 4.2 10.1 1.0
CD2 A:HIS78 4.2 9.8 1.0
CD2 A:HIS69 4.2 9.5 1.0
C A:LYS134 4.7 13.3 1.0
CA A:ASP81 4.8 8.7 1.0
N A:HIS78 4.8 9.1 1.0
O A:HOH158 4.8 16.3 1.0
CA A:HIS78 4.8 9.1 1.0
N A:ASP81 4.9 9.4 1.0
N A:GLY70 4.9 10.4 1.0
N A:HIS69 4.9 9.8 1.0

Zinc binding site 2 out of 2 in 1xso

Go back to Zinc Binding Sites List in 1xso
Zinc binding site 2 out of 2 in the Three-Dimensional Structure of Xenopus Laevis Cu,Zn Superoxide Dismutase B Determined By X-Ray Crystallography at 1.5 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Three-Dimensional Structure of Xenopus Laevis Cu,Zn Superoxide Dismutase B Determined By X-Ray Crystallography at 1.5 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn153

b:8.9
occ:1.00
OD1 B:ASP81 2.0 7.8 1.0
ND1 B:HIS78 2.0 9.7 1.0
ND1 B:HIS61 2.0 8.4 1.0
ND1 B:HIS69 2.0 8.4 1.0
CG B:ASP81 2.8 7.1 1.0
CE1 B:HIS78 2.9 9.5 1.0
CE1 B:HIS69 2.9 9.7 1.0
OD2 B:ASP81 2.9 8.6 1.0
CE1 B:HIS61 3.0 13.1 1.0
CG B:HIS61 3.1 8.4 1.0
CG B:HIS78 3.1 10.1 1.0
CG B:HIS69 3.2 8.3 1.0
CB B:HIS61 3.5 7.6 1.0
CB B:HIS78 3.6 9.7 1.0
CB B:HIS69 3.7 8.7 1.0
O B:LYS134 3.8 13.2 1.0
CA B:HIS69 4.0 8.8 1.0
NE2 B:HIS78 4.1 12.1 1.0
NE2 B:HIS61 4.1 10.1 1.0
NE2 B:HIS69 4.1 9.6 1.0
CD2 B:HIS61 4.2 10.5 1.0
CD2 B:HIS78 4.2 11.5 1.0
CB B:ASP81 4.2 8.6 1.0
CD2 B:HIS69 4.3 9.9 1.0
O B:HOH160 4.7 16.2 1.0
CA B:ASP81 4.7 7.3 1.0
C B:LYS134 4.8 13.7 1.0
N B:HIS78 4.8 9.4 1.0
CA B:HIS78 4.9 9.0 1.0
N B:ASP81 4.9 7.8 1.0
N B:HIS69 4.9 11.6 1.0
N B:GLY70 5.0 9.3 1.0

Reference:

K.Djinovic Carugo, A.Battistoni, M.T.Carri, F.Polticelli, A.Desideri, G.Rotilio, A.Coda, K.S.Wilson, M.Bolognesi. Three-Dimensional Structure of Xenopus Laevis Cu,Zn Superoxide Dismutase B Determined By X-Ray Crystallography at 1.5 A Resolution. Acta Crystallogr.,Sect.D V. 52 176 1996.
ISSN: ISSN 0907-4449
PubMed: 15299740
DOI: 10.1107/S0907444995007608
Page generated: Wed Oct 16 20:35:14 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy