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Zinc in PDB 1krm: Crystal Structure of Bovine Adenosine Deaminase Complexed with 6- Hydroxyl-1,6-Dihydropurine Riboside

Enzymatic activity of Crystal Structure of Bovine Adenosine Deaminase Complexed with 6- Hydroxyl-1,6-Dihydropurine Riboside

All present enzymatic activity of Crystal Structure of Bovine Adenosine Deaminase Complexed with 6- Hydroxyl-1,6-Dihydropurine Riboside:
3.5.4.4;

Protein crystallography data

The structure of Crystal Structure of Bovine Adenosine Deaminase Complexed with 6- Hydroxyl-1,6-Dihydropurine Riboside, PDB code: 1krm was solved by T.Kinoshita, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 2.50
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 80.030, 80.030, 141.680, 90.00, 90.00, 90.00
R / Rfree (%) 19.6 / 19.8

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Bovine Adenosine Deaminase Complexed with 6- Hydroxyl-1,6-Dihydropurine Riboside (pdb code 1krm). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Bovine Adenosine Deaminase Complexed with 6- Hydroxyl-1,6-Dihydropurine Riboside, PDB code: 1krm:

Zinc binding site 1 out of 1 in 1krm

Go back to Zinc Binding Sites List in 1krm
Zinc binding site 1 out of 1 in the Crystal Structure of Bovine Adenosine Deaminase Complexed with 6- Hydroxyl-1,6-Dihydropurine Riboside


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Bovine Adenosine Deaminase Complexed with 6- Hydroxyl-1,6-Dihydropurine Riboside within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn501

b:26.0
occ:1.00
 O6 A:PRH401 1.9 25.5 1.0
NE2 A:HIS12 2.0 15.1 1.0
NE2 A:HIS14 2.1 19.4 1.0
NE2 A:HIS211 2.2 26.0 1.0
OD1 A:ASP292 2.2 17.5 1.0
N7 A:PRH401 2.3 27.8 1.0
C5 A:PRH401 2.5 23.1 1.0
C6 A:PRH401 2.7 22.9 1.0
CE1 A:HIS14 3.0 16.2 1.0
CD2 A:HIS12 3.0 18.3 1.0
CD2 A:HIS211 3.1 25.8 1.0
CE1 A:HIS12 3.1 20.1 1.0
CD2 A:HIS14 3.1 16.3 1.0
CG A:ASP292 3.2 19.4 1.0
C8 A:PRH401 3.3 27.2 1.0
CE1 A:HIS211 3.3 26.3 1.0
N1 A:PRH401 3.4 21.0 1.0
C4 A:PRH401 3.5 23.5 1.0
OD2 A:ASP292 3.6 18.0 1.0
N9 A:PRH401 3.9 24.2 1.0
ND1 A:HIS14 4.1 17.6 1.0
CG A:HIS14 4.2 19.4 1.0
NE2 A:HIS235 4.2 12.6 1.0
ND1 A:HIS12 4.3 22.2 1.0
CG A:HIS12 4.3 19.8 1.0
CG A:HIS211 4.3 26.2 1.0
C2 A:PRH401 4.4 23.6 1.0
ND1 A:HIS211 4.4 25.1 1.0
N3 A:PRH401 4.5 22.6 1.0
CB A:ASP292 4.5 19.6 1.0
OD2 A:ASP293 4.7 27.9 1.0
CD2 A:HIS235 4.7 14.7 1.0
CA A:ASP292 4.9 17.1 1.0

Reference:

T.Kinoshita, N.Nishio, I.Nakanishi, A.Sato, T.Fujii. Structure of Bovine Adenosine Deaminase Complexed with 6-Hydroxy-1,6-Dihydropurine Riboside. Acta Crystallogr.,Sect.D V. 59 299 2003.
ISSN: ISSN 0907-4449
PubMed: 12554940
DOI: 10.1107/S090744490202190X
Page generated: Wed Dec 16 02:55:37 2020

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