Zinc in PDB 1kq3: Crystal Structure of A Glycerol Dehydrogenase (TM0423) From Thermotoga Maritima at 1.5 A Resolution

The structure of Crystal Structure of A Glycerol Dehydrogenase (TM0423) From Thermotoga Maritima at 1.5 A Resolution, PDB code: 1kq3 was solved by I.A.Wilson, M.D.Miller, Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.50
Space group	I 4 2 2
Cell size a, b, c (Å), α, β, γ (°)	105.730, 105.730, 135.790, 90.00, 90.00, 90.00
R / Rfree (%)	17.3 / 18.9

The structure of Crystal Structure of A Glycerol Dehydrogenase (TM0423) From Thermotoga Maritima at 1.5 A Resolution also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Zinc atom in the Crystal Structure of A Glycerol Dehydrogenase (TM0423) From Thermotoga Maritima at 1.5 A Resolution (pdb code 1kq3). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of A Glycerol Dehydrogenase (TM0423) From Thermotoga Maritima at 1.5 A Resolution, PDB code: 1kq3:

Zinc binding site 1 out of 1 in the Crystal Structure of A Glycerol Dehydrogenase (TM0423) From Thermotoga Maritima at 1.5 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Glycerol Dehydrogenase (TM0423) From Thermotoga Maritima at 1.5 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:12.7 occ:1.00 NE2 A:HIS269 2.1 10.8 1.0 NE2 A:HIS252 2.1 9.3 1.0 OD1 A:ASP169 2.1 12.7 1.0 O2 A:TRS2922 2.1 12.5 1.0 O1 A:TRS2922 2.1 15.2 1.0 N A:TRS2922 2.2 13.5 1.0 C A:TRS2922 2.8 14.4 1.0 CG A:ASP169 2.9 11.6 1.0 C2 A:TRS2922 3.0 13.9 1.0 CE1 A:HIS252 3.0 10.6 1.0 CE1 A:HIS269 3.0 12.4 1.0 CD2 A:HIS252 3.1 9.7 1.0 C1 A:TRS2922 3.1 14.3 1.0 CD2 A:HIS269 3.1 9.5 1.0 OD2 A:ASP169 3.1 11.7 1.0 OD1 A:ASP119 3.9 12.6 1.0 ND1 A:HIS252 4.2 9.7 1.0 ND1 A:HIS269 4.2 12.4 1.0 CG A:HIS252 4.2 9.1 1.0 CG A:HIS269 4.2 10.6 1.0 CG2 A:VAL273 4.3 10.0 1.0 C3 A:TRS2922 4.3 16.3 1.0 CB A:ASP169 4.3 9.1 1.0 CL A:CL501 4.4 11.5 1.0 CG A:ASP119 4.8 11.7 1.0 O A:HOH2979 4.9 22.0 1.0 CA A:ASP169 4.9 8.6 1.0 OD2 A:ASP119 5.0 14.3 1.0

S.A.Lesley, P.Kuhn, A.Godzik, A.M.Deacon, I.Mathews, A.Kreusch, G.Spraggon, H.E.Klock, D.Mcmullan, T.Shin, J.Vincent, A.Robb, L.S.Brinen, M.D.Miller, T.M.Mcphillips, M.A.Miller, D.Scheibe, J.M.Canaves, C.Guda, L.Jaroszewski, T.L.Selby, M.-A.Elsliger, J.Wooley, S.S.Taylor, K.O.Hodgson, I.A.Wilson, P.G.Schultz, R.C.Stevens. Structural Genomics of the Thermotoga Maritima Proteome Implemented in A High-Throughput Structure Determination Pipeline Proc.Natl.Acad.Sci.Usa V. 99 11664 2002.
ISSN: ISSN 0027-8424
PubMed: 12193646
DOI: 10.1073/PNAS.142413399