Zinc in PDB 1g47: 1ST Lim Domain of Pinch Protein

The binding sites of Zinc atom in the 1ST Lim Domain of Pinch Protein (pdb code 1g47). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the 1ST Lim Domain of Pinch Protein, PDB code: 1g47:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the 1ST Lim Domain of Pinch Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of 1ST Lim Domain of Pinch Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn998 b:0.0 occ:1.00 ND1 A:HIS32 2.0 0.0 1.0 SG A:CYS10 2.3 0.0 1.0 SG A:CYS13 2.3 0.0 1.0 SG A:CYS35 2.3 0.0 1.0 HB2 A:CYS10 2.4 0.0 1.0 CB A:CYS10 2.5 0.0 1.0 HB3 A:CYS10 2.5 0.0 1.0 HB3 A:CYS13 2.6 0.0 1.0 HB2 A:HIS32 2.7 0.0 1.0 CB A:CYS13 3.0 0.0 1.0 CE1 A:HIS32 3.0 0.0 1.0 CG A:HIS32 3.0 0.0 1.0 HE1 A:HIS32 3.2 0.0 1.0 CB A:HIS32 3.3 0.0 1.0 CB A:CYS35 3.4 0.0 1.0 HB2 A:CYS35 3.5 0.0 1.0 HB3 A:CYS35 3.5 0.0 1.0 H A:GLY15 3.5 0.0 1.0 H A:HIS32 3.6 0.0 1.0 HB2 A:CYS13 3.6 0.0 1.0 CA A:CYS10 4.0 0.0 1.0 N A:HIS32 4.0 0.0 1.0 CA A:CYS13 4.1 0.0 1.0 HB3 A:HIS32 4.1 0.0 1.0 CD2 A:HIS32 4.1 0.0 1.0 NE2 A:HIS32 4.2 0.0 1.0 HA3 A:GLY15 4.3 0.0 1.0 CA A:HIS32 4.3 0.0 1.0 H A:LYS14 4.3 0.0 1.0 HG2 A:ARG12 4.3 0.0 1.0 HE2 A:PHE17 4.3 0.0 1.0 N A:CYS13 4.3 0.0 1.0 HA A:CYS10 4.4 0.0 1.0 N A:GLY15 4.4 0.0 1.0 H A:CYS13 4.4 0.0 1.0 HD2 A:PHE17 4.4 0.0 1.0 HA A:TYR31 4.5 0.0 1.0 C A:CYS13 4.6 0.0 1.0 H A:CYS10 4.6 0.0 1.0 N A:LYS14 4.6 0.0 1.0 H A:GLU11 4.6 0.0 1.0 HA A:HIS32 4.7 0.0 1.0 C A:CYS10 4.8 0.0 1.0 CA A:CYS35 4.8 0.0 1.0 N A:CYS10 4.8 0.0 1.0 C A:TYR31 4.9 0.0 1.0 CA A:GLY15 4.9 0.0 1.0 CE2 A:PHE17 4.9 0.0 1.0 HG3 A:ARG12 4.9 0.0 1.0 N A:GLU11 4.9 0.0 1.0 C A:ARG12 4.9 0.0 1.0 CD2 A:PHE17 5.0 0.0 1.0 HA A:CYS35 5.0 0.0 1.0

Zinc binding site 2 out of 2 in the 1ST Lim Domain of Pinch Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of 1ST Lim Domain of Pinch Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn999 b:0.0 occ:1.00 ND1 A:HIS61 2.0 0.0 1.0 HB2 A:CYS38 2.2 0.0 1.0 SG A:CYS41 2.3 0.0 1.0 SG A:CYS59 2.3 0.0 1.0 SG A:CYS38 2.3 0.0 1.0 CB A:CYS38 2.5 0.0 1.0 HB3 A:CYS38 2.7 0.0 1.0 HB3 A:HIS61 2.8 0.0 1.0 H A:ASP62 2.8 0.0 1.0 CE1 A:HIS61 3.0 0.0 1.0 CG A:HIS61 3.1 0.0 1.0 HB3 A:GLN43 3.1 0.0 1.0 HE1 A:HIS61 3.2 0.0 1.0 HB2 A:ASP62 3.3 0.0 1.0 H A:CYS41 3.4 0.0 1.0 CB A:HIS61 3.4 0.0 1.0 H A:CYS59 3.4 0.0 1.0 HB3 A:CYS41 3.5 0.0 1.0 CB A:CYS41 3.6 0.0 1.0 H A:GLN43 3.8 0.0 1.0 N A:ASP62 3.8 0.0 1.0 CA A:CYS38 4.0 0.0 1.0 CB A:CYS59 4.1 0.0 1.0 CB A:GLN43 4.1 0.0 1.0 OD2 A:ASP62 4.1 0.0 1.0 H A:HIS61 4.1 0.0 1.0 NE2 A:HIS61 4.2 0.0 1.0 HB2 A:HIS61 4.2 0.0 1.0 CD2 A:HIS61 4.2 0.0 1.0 HB2 A:GLN43 4.2 0.0 1.0 N A:CYS41 4.2 0.0 1.0 CB A:ASP62 4.2 0.0 1.0 HA A:CYS38 4.3 0.0 1.0 N A:CYS59 4.3 0.0 1.0 HB2 A:GLN40 4.3 0.0 1.0 HB2 A:CYS41 4.3 0.0 1.0 CA A:CYS41 4.4 0.0 1.0 CA A:HIS61 4.4 0.0 1.0 HB3 A:CYS59 4.5 0.0 1.0 C A:HIS61 4.6 0.0 1.0 H A:PHE42 4.6 0.0 1.0 N A:GLN43 4.6 0.0 1.0 CA A:ASP62 4.6 0.0 1.0 CG A:ASP62 4.6 0.0 1.0 HB2 A:CYS59 4.7 0.0 1.0 N A:HIS61 4.7 0.0 1.0 H A:CYS38 4.7 0.0 1.0 CA A:CYS59 4.7 0.0 1.0 H A:GLN40 4.7 0.0 1.0 N A:CYS38 4.8 0.0 1.0 O A:CYS59 4.9 0.0 1.0 HG2 A:GLN43 4.9 0.0 1.0 C A:CYS38 4.9 0.0 1.0 C A:CYS41 4.9 0.0 1.0 HA A:TYR58 4.9 0.0 1.0 N A:PHE42 4.9 0.0 1.0 CA A:GLN43 5.0 0.0 1.0

A.Velyvis, Y.Yang, C.Wu, J.Qin. Solution Structure of the Focal Adhesion Adaptor Pinch LIM1 Domain and Characterization of Its Interaction with the Integrin-Linked Kinase Ankyrin Repeat Domain. J.Biol.Chem. V. 276 4932 2001.
ISSN: ISSN 0021-9258
PubMed: 11078733
DOI: 10.1074/JBC.M007632200