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Zinc in PDB, part 277 (files: 11041-11080), PDB 5fyz-5g11

Experimental structures of coordination spheres of Zinc (Zn) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Zinc atoms. PDB files: 11041-11080 (PDB 5fyz-5g11).
  1. 5fyz (Zn: 2) - Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with 3D Fragment 2-(2-Oxo-2,3-Dihydro-1H-Indol-3-Yl)Acetonitrile (N10063A)
    Other atoms: Mn (1); Na (1);
  2. 5fz0 (Zn: 2) - Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with 2,5-Dichloro-N-(Pyridin-3-Yl)Thiophene-3-Carboxamide (N08137B) (Ligand Modelled Based on Pandda Event Map, Sgc - Diamond I04-1 Fragment Screening)
    Other atoms: Mn (1); Cl (3);
  3. 5fz1 (Zn: 2) - Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with Maybridge Fragment 2,4-Dichloro-N-Pyridin-3-Ylbenzamide (E48115B) (Ligand Modelled Based on Pandda Event Map)
    Other atoms: Mn (1); Cl (2);
  4. 5fz3 (Zn: 2) - Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with Maybridge Fragment 3,6-Dihydroxybenzonorbornane (N08776B) (Ligand Modelled Based on Pandda Event Map)
    Other atoms: Mn (1); Cl (1);
  5. 5fz4 (Zn: 2) - Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with 3D Fragment (3R)-1-[(3-Phenyl-1,2,4-Oxadiazol-5-Yl) Methyl]Pyrrolidin-3-Ol (N10057A) (Ligand Modelled Based on Pandda Event Map, Sgc - Diamond I04-1 Fragment Screening)
    Other atoms: Mn (1); Cl (1);
  6. 5fz5 (Zn: 10) - Transcription Initiation Complex Structures Elucidate Dna Opening (Cc)
    Other atoms: Mg (1);
  7. 5fz6 (Zn: 2) - Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with Maybridge Fragment N05859B (Ligand Modelled Based on Pandda Event Map, Sgc - Diamond I04-1 Fragment Screening)
    Other atoms: Mn (1); Cl (1);
  8. 5fz7 (Zn: 2) - Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with Maybridge Fragment Ethyl 2-Amino-4-Thiophen-2-Ylthiophene-3- Carboxylate (N06131B) (Ligand Modelled Based on Pandda Event Map, Sgc - Diamond I04-1 Fragment Screening)
    Other atoms: Mn (1); Cl (1);
  9. 5fz8 (Zn: 2) - Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with Malate
    Other atoms: Mn (1); Cl (1);
  10. 5fz9 (Zn: 2) - Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with Maybridge Fragment Thieno(3,2-B)Thiophene-5-Carboxylic Acid (N06263B) (Ligand Modelled Based on Pandda Event Map, Sgc - Diamond I04-1 Fragment Screening)
    Other atoms: Mn (1); Cl (1);
  11. 5fza (Zn: 2) - Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with 3D Fragment 2-Piperidin-4-Yloxy-5-(Trifluoromethyl)Pyridine (N10072A) (Ligand Modelled Based on Pandda Event Map)
    Other atoms: F (3); Mn (1); Cl (1);
  12. 5fzb (Zn: 2) - Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with Maybridge Fragment 4-Pyridylthiourea (N06275B) (Ligand Modelled Based on Pandda Event Map, Sgc - Diamond I04-1 Fragment Screening)
    Other atoms: Mn (1); Cl (1);
  13. 5fzc (Zn: 2) - Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with Maybridge Fragment 4,5-Dihydronaphtho(1,2-B)Thiophene-2- Carboxylicacid (N11181A) (Ligand Modelled Based on Pandda Event Map, Sgc - Diamond I04-1 Fragment Screening)
    Other atoms: Mn (1); Cl (1);
  14. 5fzd (Zn: 2) - Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with L-2-Hydroxyglutarate
    Other atoms: Mn (1); Cl (1);
  15. 5fze (Zn: 2) - Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with MC3960
    Other atoms: Mn (2); Cl (1);
  16. 5fzf (Zn: 2) - Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with MC3962
    Other atoms: Mn (1); Cl (1);
  17. 5fzg (Zn: 2) - Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with MC3948
    Other atoms: Mn (1); Cl (1);
  18. 5fzh (Zn: 1) - Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with Maybridge Fragment 4,5-Dihydronaphtho(1,2-B)Thiophene-2- Carboxylicacid (N11181A) (Ligand Modelled Based on Pandda Event Map, Sgc - Diamond I04-1 Fragment Screening)
    Other atoms: F (1); Mn (2); Cl (1);
  19. 5fzi (Zn: 1) - Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with MC3095
    Other atoms: Mn (2); Cl (1);
  20. 5fzk (Zn: 1) - Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with 3D Fragment N,3-Dimethyl-N-(Pyridin-3-Ylmethyl)-1,2-Oxazole-5- Carboxamide (N10051A) (Ligand Modelled Based on Pandda Event Map, Sgc - Diamond I04-1 Fragment Screening)
    Other atoms: Mn (1); Cl (1);
  21. 5fzl (Zn: 1) - Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with 3D Fragment 3-Methyl-N-Pyridin-4-Yl-1,2-Oxazole-5-Carboxamide (N09954A) (Ligand Modelled Based on Pandda Event Map, Sgc - Diamond I04-1 Fragment Screening)
    Other atoms: Mn (1); Cl (1);
  22. 5fzm (Zn: 1) - Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with 3D Fragment 5-(2-Fluorophenyl)-1,3-Oxazole-4-Carboxylic Acid (N09989B) (Ligand Modelled Based on Pandda Event Map, Sgc - Diamond I04-1 Fragment Screening)
    Other atoms: F (1); Mn (1); Cl (1);
  23. 5g01 (Zn: 1) - An Unusual Natural Product Primary Sulfonamide: Synthesis, Carbonic Anhydrase Inhibition and Protein X-Ray Structure of Psammaplin C
    Other atoms: Br (2); Na (1);
  24. 5g03 (Zn: 1) - An Unusual Natural Product Primary Sulfonamide: Synthesis, Carbonic Anhydrase Inhibition and Protein X-Ray Structure of Psammaplin C
    Other atoms: Br (1);
  25. 5g04 (Zn: 3) - Structure of the Human Apc-CDC20-HSL1 Complex
  26. 5g05 (Zn: 3) - Cryo-Em Structure of Combined Apo Phosphorylated Apc
  27. 5g0b (Zn: 1) - An Unusual Natural Product Primary Sulfonamide: Synthesis, Carbonic Anhydrase Inhibition and Protein X-Ray Structure of Psammaplin C
    Other atoms: Cl (1);
  28. 5g0c (Zn: 1) - An Unusual Natural Product Primary Sulfonamide: Synthesis, Carbonic Anhydrase Inhibition and Protein X-Ray Structure of Psammaplin C
    Other atoms: Na (3);
  29. 5g0f (Zn: 3) - Crystal Structure of Danio Rerio HDAC6 Znf-Ubp Domain
    Other atoms: Ni (2);
  30. 5g0g (Zn: 1) - Crystal Structure of Danio Rerio HDAC6 CD1 in Complex with Trichostatin A
    Other atoms: Cl (5); Na (2);
  31. 5g0h (Zn: 1) - Crystal Structure of Danio Rerio HDAC6 CD2 in Complex with ( S)-Trichostatin A
    Other atoms: K (2);
  32. 5g0i (Zn: 4) - Crystal Structure of Danio Rerio HDAC6 CD1 and CD2 (Linker Cleaved) in Complex with Nexturastat A
    Other atoms: K (8); Cl (1);
  33. 5g0j (Zn: 1) - Crystal Structure of Danio Rerio HDAC6 CD1 and CD2 (Linker Intact) in Complex with Nexturastat A
    Other atoms: K (5); Cl (2);
  34. 5g0n (Zn: 1) - Structure of Rat Neuronal Nitric Oxide Synthase D597N Mutant Heme Domain in Complex with N1-(5-(2-(6-Amino-4- Methylpyridin-2-Yl)Ethyl)Pyridin-3-Yl)-N1,N2- Dimethylethane-1,2-Diamine
    Other atoms: Fe (2);
  35. 5g0o (Zn: 1) - Structure of Rat Neuronal Nitric Oxide Synthase D597N Mutant Heme Domain in Complex with 4-Methyl-6-(2-(5-(4- Methylpiperazin-1-Yl)Pyridin-3-Yl)Ethyl)Pyridin-2-Amine
    Other atoms: Fe (2);
  36. 5g0p (Zn: 1) - Structure of Rat Neuronal Nitric Oxide Synthase M336V D597N Mutant Heme Domain in Complex with 6-(2-(5-(3-(Dimethylamino) Propyl)Pyridin-3-Yl)Ethyl)-4-Methylpyridin-2-Amine
    Other atoms: Fe (2);
  37. 5g0x (Zn: 2) - Pseudomonas Aeruginosa Hdah Bound to Acetate.
    Other atoms: K (4);
  38. 5g0y (Zn: 2) - Pseudomonas Aeruginosa Hdah Unliganded.
    Other atoms: K (4);
  39. 5g10 (Zn: 2) - Pseudomonas Aeruginosa Hdah Bound to 9,9,9 Trifluoro-8,8-Dihydroy-N- Phenylnonanamide
    Other atoms: F (6); K (4);
  40. 5g11 (Zn: 2) - Pseudomonas Aeruginosa Hdah Bound to Pfsaha.
    Other atoms: F (24); K (4);
Page generated: Fri Dec 24 10:26:25 2021

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