Zinc in PDB 5g11: Pseudomonas Aeruginosa Hdah Bound to Pfsaha.

The structure of Pseudomonas Aeruginosa Hdah Bound to Pfsaha., PDB code: 5g11 was solved by A.Kraemer, F.J.Meyer-Almes, O.Yildiz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	75.96 / 2.48
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	81.790, 81.790, 204.860, 90.00, 90.00, 90.00
R / Rfree (%)	16.8 / 22.4

The structure of Pseudomonas Aeruginosa Hdah Bound to Pfsaha. also contains other interesting chemical elements:

Fluorine	(F)	24 atoms
Potassium	(K)	4 atoms

The binding sites of Zinc atom in the Pseudomonas Aeruginosa Hdah Bound to Pfsaha. (pdb code 5g11). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Pseudomonas Aeruginosa Hdah Bound to Pfsaha., PDB code: 5g11:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Pseudomonas Aeruginosa Hdah Bound to Pfsaha.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Pseudomonas Aeruginosa Hdah Bound to Pfsaha. within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1373 b:15.5 occ:0.60 O1 A:7H11372 2.0 20.8 0.7 OD2 A:ASP269 2.0 13.3 1.0 OD1 A:ASP181 2.0 13.9 1.0 O A:7H11372 2.0 19.4 0.7 OD2 A:ASP181 2.1 13.9 1.0 ND1 A:HIS183 2.2 13.5 1.0 CG A:ASP181 2.4 13.2 1.0 C A:7H11372 2.7 23.6 0.7 N A:7H11372 2.8 21.3 0.7 CG A:ASP269 3.0 12.8 1.0 CE1 A:HIS183 3.0 13.2 1.0 CG A:HIS183 3.2 12.9 1.0 OD1 A:ASP269 3.4 13.2 1.0 CB A:HIS183 3.6 12.5 1.0 N A:HIS183 3.9 12.1 1.0 CB A:ASP181 3.9 12.8 1.0 NE2 A:HIS143 4.0 12.8 1.0 C1 A:7H11372 4.1 26.7 0.7 F3 A:7H11372 4.2 30.2 0.7 NE2 A:HIS183 4.2 13.1 1.0 CA A:GLY311 4.2 16.9 1.0 N A:VAL182 4.3 12.0 1.0 CD2 A:HIS183 4.3 13.1 1.0 F2 A:7H11372 4.3 29.6 0.7 CA A:HIS183 4.4 12.2 1.0 CB A:ASP269 4.4 12.5 1.0 CE1 A:HIS143 4.4 12.8 1.0 CG1 A:VAL182 4.4 11.9 1.0 NE2 A:HIS144 4.5 13.2 1.0 C2 A:7H11372 4.6 29.1 0.7 N A:GLY311 4.6 16.6 1.0 O A:HOH2137 4.6 23.6 1.0 CA A:ASP181 4.7 12.4 1.0 C A:ASP181 4.7 12.1 1.0 F A:7H11372 4.8 27.6 0.7 F1 A:7H11372 4.8 27.2 0.7 C A:VAL182 4.9 11.9 1.0

Zinc binding site 2 out of 2 in the Pseudomonas Aeruginosa Hdah Bound to Pfsaha.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Pseudomonas Aeruginosa Hdah Bound to Pfsaha. within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1379 b:17.4 occ:0.60 OD2 B:ASP269 2.0 15.1 1.0 O B:7H11378 2.0 21.4 0.7 O1 B:7H11378 2.0 22.4 0.7 OD1 B:ASP181 2.0 13.9 1.0 ND1 B:HIS183 2.1 15.0 1.0 OD2 B:ASP181 2.6 12.6 1.0 CG B:ASP181 2.6 12.9 1.0 C B:7H11378 2.7 24.8 0.7 N B:7H11378 2.7 23.0 0.7 CE1 B:HIS183 2.9 14.9 1.0 CG B:ASP269 3.0 14.0 1.0 CG B:HIS183 3.2 14.1 1.0 OD1 B:ASP269 3.5 14.2 1.0 CB B:HIS183 3.7 13.7 1.0 N B:HIS183 4.0 12.9 1.0 F3 B:7H11378 4.1 28.9 0.7 NE2 B:HIS183 4.1 14.8 1.0 C1 B:7H11378 4.1 27.2 0.7 CB B:ASP181 4.1 12.8 1.0 F2 B:7H11378 4.2 29.0 0.7 NE2 B:HIS143 4.2 13.8 1.0 CA B:GLY311 4.2 17.6 1.0 CD2 B:HIS183 4.2 14.3 1.0 CB B:ASP269 4.3 13.4 1.0 CG1 B:VAL182 4.4 12.1 1.0 N B:VAL182 4.4 12.3 1.0 C2 B:7H11378 4.5 28.7 0.7 CA B:HIS183 4.5 13.3 1.0 NE2 B:HIS144 4.6 14.7 1.0 O B:HOH2139 4.6 25.9 1.0 CE1 B:HIS143 4.6 13.8 1.0 N B:GLY311 4.7 17.3 1.0 O B:HOH2110 4.7 37.6 1.0 F1 B:7H11378 4.8 28.0 0.7 C B:ASP181 4.8 12.4 1.0 CA B:ASP181 4.8 12.6 1.0 F B:7H11378 4.9 27.4 0.7 C B:VAL182 5.0 12.4 1.0 O B:HOH2058 5.0 36.2 1.0

A.Kramer, T.Wagner, O.Yildiz, F.J.Meyer-Almes. Crystal Structure of A Histone Deacetylase Homologue From Pseudomonas Aeruginosa. Biochemistry V. 55 6858 2016.
ISSN: ISSN 1520-4995
PubMed: 27951649
DOI: 10.1021/ACS.BIOCHEM.6B00613