Zinc in PDB, part 218 (files: 8681-8720),
PDB 4jk1-4k0d
Experimental structures of coordination spheres of Zinc (Zn) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Zinc atoms. PDB files: 8681-8720 (PDB 4jk1-4k0d).
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4jk1 (Zn: 4) - X-Ray Crystal Structure of Escherichia Coli SIGMA70 Holoenzyme in Complex with Guanosine Tetraphosphate (Ppgpp)
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4jk2 (Zn: 4) - X-Ray Crystal Structure of Escherichia Coli SIGMA70 Holoenzyme in Complex with Guanosine Pentaphosphate (Pppgpp)
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4jkr (Zn: 4) - Crystal Structure of E. Coli Rna Polymerase in Complex with Ppgpp
Other atoms:
Sr (8);
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4jlw (Zn: 8) - Crystal Structure of Formaldehyde Dehydrogenase From Pseudomonas Aeruginosa
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4jlx (Zn: 1) - Structure of Porcine Cyclic Gmp-Amp Synthase (Cgas)
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4jlz (Zn: 2) - Structure of Porcine Cgas in Complex with Bound Utp
Other atoms:
Mg (2);
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4jmy (Zn: 2) - Crystal Structure of Hcv NS3/NS4A Protease Complexed with Ddivpc Peptide
Other atoms:
Na (2);
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4jnj (Zn: 9) - Structure Based Engineering of Streptavidin Monomer with A Reduced Biotin Dissociation Rate
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4jom (Zn: 2) - Structure of E. Coli Pol III 3MPHP Mutant
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4jp4 (Zn: 4) - MMP13 in Complex with A Reverse Hydroxamate Zn-Binder
Other atoms:
F (8);
Ca (4);
Na (2);
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4jpa (Zn: 4) - MMP13 in Complex with A Piperazine Hydantoin Ligand
Other atoms:
Ca (4);
Na (2);
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4jqg (Zn: 4) - Crystal Structure of An Inactive Mutant of Mmp-9 Catalytic Domain in Complex with A Fluorogenic Synthetic Peptidic Substrate with A Fluorine Atom.
Other atoms:
F (2);
Sr (3);
Ca (3);
Na (3);
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4jqp (Zn: 2) - X-Ray Crystal Structure of A 4-Hydroxythreonine-4-Phosphate Dehydrogenase From Burkholderia Phymatum
Other atoms:
Mg (2);
Ca (2);
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4js6 (Zn: 1) - Crystal Structure of Inhibitor-Free Hcaii H94D
Other atoms:
Hg (1);
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4jsa (Zn: 1) - Benzenesulfonamide Complexed with Hcaii H94D
Other atoms:
Hg (1);
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4jse (Zn: 3) - Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6,6'-(Pentane-1,5-Diyl)Bis(4-Methylpyridin-2-Amine)
Other atoms:
Fe (2);
Cl (4);
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4jsf (Zn: 1) - Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6,6'-(Heptane-1,7-Diyl)Bis(4-Methylpyridin-2-Amine)
Other atoms:
Fe (2);
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4jsg (Zn: 1) - Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6-((3-(3-Aminopropoxy)Phenoxy)Methyl)-4-Methylpyridin-2-Amine
Other atoms:
Fe (2);
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4jsh (Zn: 1) - Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 4-Methyl-6-((3-(Piperidin-4-Ylmethoxy)Phenoxy)Methyl)Pyridin-2- Amine
Other atoms:
Fe (2);
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4jsi (Zn: 1) - Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6-((3-(((3-Fluorophenethyl)Amino)Methyl)Phenoxy)Methyl)-4- Methylpyridin-2-Amine
Other atoms:
F (2);
Fe (2);
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4jsj (Zn: 1) - Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6-(((5-(((3-Fluorophenethyl)Amino)Methyl)Pyridin-3-Yl)Oxy) Methyl)-4-Methylpyridin-2-Amine
Other atoms:
F (2);
Fe (2);
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4jsk (Zn: 1) - Structure of Bovine Endothelial Nitric Oxide Synthase Heme Domain in Complex with 6,6'-(Pentane-1,5-Diyl)Bis(4-Methylpyridin-2-Amine)
Other atoms:
As (2);
Fe (2);
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4jsl (Zn: 1) - Structure of Bovine Endothelial Nitric Oxide Synthase Heme Domain in Complex with 6,6'-(Heptane-1,7-Diyl)Bis(4-Methylpyridin-2-Amine)
Other atoms:
As (2);
Fe (2);
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4jsm (Zn: 1) - Structure of Bovine Endothelial Nitric Oxide Synthase Heme Domain in Complex with 6-(((5-(((3-Fluorophenethyl)Amino)Methyl)Pyridin-3-Yl) Oxy)Methyl)-4-Methylpyridin-2-Amine
Other atoms:
F (2);
As (2);
Fe (2);
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4jsr (Zn: 1) - Crystal Structure of Human SIRT3 with Elt Inhibitor 11C [N-{2-[1-(6- Carbamoylthieno[3,2-D]Pyrimidin-4-Yl)Piperidin-4-Yl]Ethyl}-N'- Ethylthiophene-2,5-Dicarboxamide]
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4jss (Zn: 1) - Human Carbonic Anhydrase II H94D Bound to A Bidentate Inhibitor
Other atoms:
Hg (1);
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4jsw (Zn: 1) - Human Carbonic Anhydrase II H94C
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4jsz (Zn: 1) - Benzenesulfonamide Bound to Hcaii H94C
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4jt8 (Zn: 1) - Crystal Structure of Human SIRT3 with Elt Inhibitor 28 [4-(4-{2-[(2,2- Dimethylpropanoyl)Amino]Ethyl}Piperidin-1-Yl)Thieno[3,2-D]Pyrimidine- 6-Carboxamide[
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4jt9 (Zn: 1) - Crystal Structure of Human SIRT3 with Elt Inhibitor 3 [14-(4-{2- [(Methylsulfonyl)Amino]Ethyl}Piperidin-1-Yl)Thieno[3,2-D]Pyrimidine- 6-Carboxamide]
Other atoms:
Na (1);
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4jv5 (Zn: 1) - Crystal Structures of Pseudouridinilated Stop Codons with Asls
Other atoms:
Mg (17);
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4jx4 (Zn: 4) - Structure of the Carboxyl Transferase Domain From Rhizobium Etli Pyruvate Carboxylase
Other atoms:
Cl (2);
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4jx5 (Zn: 4) - Structure of the Carboxyl Transferase Domain From Rhizobium Etli Pyruvate Carboxylase with Pyruvate
Other atoms:
Mg (4);
Cl (4);
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4jx6 (Zn: 4) - Structure of the Carboxyl Transferase Domain Y628A From Rhizobium Etli Pyruvate Carboxylase with Pyruvate
Other atoms:
Mg (4);
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4jxe (Zn: 4) - Crystal Structure of Schizosaccharomyces Pombe SST2 Catalytic Domain
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4jy6 (Zn: 18) - Crystal Structure of Human Fab PGT123, A Broadly Reactive and Potent Hiv-1 Neutralizing Antibody
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4jyw (Zn: 2) - X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with CTT1057
Other atoms:
F (2);
Ca (1);
Cl (1);
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4jz0 (Zn: 2) - X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with CTT1055
Other atoms:
F (1);
Ca (1);
Cl (1);
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4k08 (Zn: 1) - Periplasmic Sensor Domain of Chemotaxis Protein, ADEH_3718
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4k0d (Zn: 5) - Periplasmic Sensor Domain of Sensor Histidine Kinase, ADEH_2942
Other atoms:
Cl (4);
Na (1);
Page generated: Mon Dec 15 11:32:30 2025
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