Zinc in PDB, part 199 (files: 7921-7960),
PDB 4d33-4djl
Experimental structures of coordination spheres of Zinc (Zn) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Zinc atoms. PDB files: 7921-7960 (PDB 4d33-4djl).
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4d33 (Zn: 1) - Structure of Bovine Endothelial Nitric Oxide Synthase Heme Domain in Complex with (N1-(2-(1H-Imidazol-1-Yl)Pyrimidin- 4-Yl)-N2-(3-Fluorophenethyl)Ethane-1,2-Diamine
Other atoms:
F (2);
Fe (2);
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4d34 (Zn: 1) - Structure of Bovine Endothelial Nitric Oxide Synthase Heme Domain in Complex with 2-(2-(1H-Imidazol-1-Yl)Pyrimidin-4- Yl)-N-(3-Fluorophenethyl)Ethan-1-Amine
Other atoms:
F (2);
As (2);
Fe (2);
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4d35 (Zn: 1) - Structure of Bovine Endothelial Nitric Oxide Synthase Heme Domain in Complex with N-2-(2-(1H-Imidazol-1-Yl)Pyrimidin- 4-Yl)Ethyl-3-(3-Fluorophenyl)Propan-1-Amine
Other atoms:
F (2);
As (2);
Fe (2);
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4d36 (Zn: 1) - Structure of Bovine Endothelial Nitric Oxide Synthase Heme Domain in Complex with N-2-(2-(1H-Imidazol-1-Yl)Pyrimidin- 4-Yl)Ethyl-3-(3-Chlorophenyl)Propan-1-Amine
Other atoms:
As (2);
Fe (2);
Cl (2);
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4d37 (Zn: 1) - Structure of Bovine Endothelial Nitric Oxide Synthase Heme Domain in Complex with N-{[(1R,2R)-2-(3-Fluorophenyl)Cyclopropyl] Ethyl}-2-[2-(1H-Imidazol-1-Yl)Pyrimidin-4-Yl]Ethanamine
Other atoms:
F (2);
As (2);
Fe (2);
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4d38 (Zn: 1) - Structure of Bovine Endothelial Nitric Oxide Synthase Heme Domain in Complex with (1R,2R)-2-(3-Fluorobenzyl)-N-{2-[2- (1H-Imidazol-1-Yl)Pyrimidin-4-Yl]Ethyl}Cyclopropanamine
Other atoms:
F (2);
As (2);
Fe (2);
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4d39 (Zn: 1) - Structure of Bovine Endothelial Nitric Oxide Synthase Heme Domain in Complex WITH2-(2-(1H-Imidazol-1-Yl)Pyrimidin-4-Yl)-N- (3-Cyanobenzyl)Ethan-1-Amine
Other atoms:
As (2);
Fe (2);
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4d3a (Zn: 1) - Structure of Bovine Endothelial Nitric Oxide Synthase Heme Domain in Complex with 3-(3-Fluorophenyl)-N-2-(2-(5-Methyl- 1H-Imidazol-1-Yl)Pyrimidin-4-Yl)Ethylpropan-1-Amine
Other atoms:
F (2);
As (2);
Fe (2);
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4d3b (Zn: 1) - Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with N1-(2-(1H-Imidazol-1-Yl)Pyrimidin-4-Yl)-N2- (3-Fluorophenethyl)Ethane-1,2-Diamine
Other atoms:
F (2);
Fe (2);
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4d52 (Zn: 1) - Crystal Structure of Fucose Binding Lectin From Aspergillus Fumigatus (Afl) in Complex with L-Galactopyranose.
Other atoms:
Na (3);
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4d6q (Zn: 1) - Crystal Structure of Human JMJD2D in Complex with 2,4-Pdca
Other atoms:
Ni (1);
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4d6r (Zn: 1) - Crystal Structure of Human JMJD2D in Complex with N-Oxalylglycine and Bound O-Toluenesulfonamide
Other atoms:
Ni (1);
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4d6s (Zn: 1) - Crystal Structure of Human JMJD2D in Complex with N- Oxalylglycine and Bound 5,6-Dimethylbenzimidazole
Other atoms:
Ni (1);
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4d7o (Zn: 1) - Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with 6-(4-(((3-Fluorophenethyl)Amino)Methyl) Phenyl)-4-Methylpyridin-2-Amine
Other atoms:
F (2);
Fe (2);
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4d7v (Zn: 6) - The Structure of the Catalytic Domain of NCLPMO9C From the Filamentous Fungus Neurospora Crassa
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4d91 (Zn: 1) - Thermolysin in Complex with Dmso and Acetate
Other atoms:
Ca (4);
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4d9q (Zn: 7) - Inhibiting Alternative Pathway Complement Activation By Targeting the Exosite on Factor D
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4d9w (Zn: 1) - Thermolysin in Complex with UBTLN32
Other atoms:
Ca (4);
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4da4 (Zn: 4) - Structure of Mouse DNMT1 (731-1602) Bound to Hemimethylated Cpg Dna
Other atoms:
F (2);
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4db3 (Zn: 1) - 1.95 Angstrom Resolution Crystal Structure of N-Acetyl-D-Glucosamine Kinase From Vibrio Vulnificus.
Other atoms:
Cl (3);
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4dd8 (Zn: 4) - Adam-8 Metalloproteinase Domain with Bound Batimastat
Other atoms:
K (2);
Ca (4);
Cl (4);
Na (8);
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4ddl (Zn: 4) - PDE10A Crystal Structure Complexed with Novel Inhibitor
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4ddt (Zn: 2) - Thermotoga Maritima Reverse Gyrase, C2 Form 2
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4ddu (Zn: 3) - Thermotoga Maritima Reverse Gyrase, C2 Form 1
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4ddv (Zn: 4) - Thermotoga Maritima Reverse Gyrase, Triclinic Form
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4ddw (Zn: 2) - Thermotoga Maritima Reverse Gyrase, C-Centered Orthorhombic Form
Other atoms:
Mg (1);
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4ddx (Zn: 4) - Thermotoga Maritima Reverse Gyrase, Primitive Monoclinic Form
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4def (Zn: 2) - Active Site Loop Dynamics of A Class Iia Fructose 1,6-Bisphosphate Aldolase From M. Tuberculosis
Other atoms:
Na (1);
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4del (Zn: 2) - Active Site Loop Dynamics of A Class Iia Fructose 1,6-Bisphosphate Aldolase From M. Tuberculosis
Other atoms:
Na (1);
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4df9 (Zn: 12) - Crystal Structure of A Putative Peptidase (BF3526) From Bacteroides Fragilis Nctc 9343 at 2.17 A Resolution
Other atoms:
Cl (15);
Na (6);
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4dff (Zn: 2) - The Sar Development of Dihydroimidazoisoquinoline Derivatives As Phosphodiesterase 10A Inhibitors For the Treatment of Schizophrenia
Other atoms:
Mg (2);
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4dgl (Zn: 2) - Crystal Structure of the CK2 Tetrameric Holoenzyme
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4dgu (Zn: 9) - Crystal Structure of A Putative Cell Adhesion Protein (BT0320) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.37 A Resolution
Other atoms:
Cl (1);
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4dgw (Zn: 1) - Crystal Structure of the SF3A Splicing Factor Complex of U2 Snrnp
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4dhl (Zn: 4) - Crystal Structure of Red Kidney Bean Purple Acid Phosphatase in Complex with Maybridge Fragment MO07123
Other atoms:
Fe (4);
-
4dig (Zn: 2) - Crystal Structure of C-Lobe of Bovine Lactoferrin Complexed with N- Acetylmuramyl L-Alanyl D-Isoglutamine at 1.8 A Resolution
Other atoms:
Fe (1);
-
4dih (Zn: 3) - X-Ray Structure of the Complex Between Human Alpha Thrombin and Thrombin Binding Aptamer in the Presence of Sodium Ions
Other atoms:
Cl (2);
Na (3);
-
4dii (Zn: 2) - X-Ray Structure of the Complex Between Human Alpha Thrombin and Thrombin Binding Aptamer in the Presence of Potassium Ions
Other atoms:
K (1);
Cl (2);
Na (1);
-
4dj4 (Zn: 6) - X-Ray Structure of Mutant N211D of Bifunctional Nuclease TBN1 From Solanum Lycopersicum (Tomato)
Other atoms:
Cl (2);
Na (1);
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4djl (Zn: 1) - Carboxypeptidase T with N-Sulfamoyl-L-Phenylalanine
Other atoms:
Ca (5);
Page generated: Mon Dec 15 11:31:46 2025
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