Atomistry » Zinc » PDB 4d9w-4dr4 » 4db3
Atomistry »
  Zinc »
    PDB 4d9w-4dr4 »
      4db3 »

Zinc in PDB 4db3: 1.95 Angstrom Resolution Crystal Structure of N-Acetyl-D-Glucosamine Kinase From Vibrio Vulnificus.

Enzymatic activity of 1.95 Angstrom Resolution Crystal Structure of N-Acetyl-D-Glucosamine Kinase From Vibrio Vulnificus.

All present enzymatic activity of 1.95 Angstrom Resolution Crystal Structure of N-Acetyl-D-Glucosamine Kinase From Vibrio Vulnificus.:
2.7.1.59;

Protein crystallography data

The structure of 1.95 Angstrom Resolution Crystal Structure of N-Acetyl-D-Glucosamine Kinase From Vibrio Vulnificus., PDB code: 4db3 was solved by G.Minasov, Z.Wawrzak, O.Onopriyenko, T.Skarina, L.Papazisi, A.Savchenko, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.45 / 1.95
Space group P 64
Cell size a, b, c (Å), α, β, γ (°) 80.400, 80.400, 110.418, 90.00, 90.00, 120.00
R / Rfree (%) 16.8 / 19.8

Other elements in 4db3:

The structure of 1.95 Angstrom Resolution Crystal Structure of N-Acetyl-D-Glucosamine Kinase From Vibrio Vulnificus. also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the 1.95 Angstrom Resolution Crystal Structure of N-Acetyl-D-Glucosamine Kinase From Vibrio Vulnificus. (pdb code 4db3). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the 1.95 Angstrom Resolution Crystal Structure of N-Acetyl-D-Glucosamine Kinase From Vibrio Vulnificus., PDB code: 4db3:

Zinc binding site 1 out of 1 in 4db3

Go back to Zinc Binding Sites List in 4db3
Zinc binding site 1 out of 1 in the 1.95 Angstrom Resolution Crystal Structure of N-Acetyl-D-Glucosamine Kinase From Vibrio Vulnificus.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of 1.95 Angstrom Resolution Crystal Structure of N-Acetyl-D-Glucosamine Kinase From Vibrio Vulnificus. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:36.2
occ:1.00
 ND1 A:HIS157 2.2 29.7 1.0
SG A:CYS184 2.3 37.8 1.0
SG A:CYS179 2.3 38.0 1.0
SG A:CYS177 2.4 39.0 1.0
CE1 A:HIS157 3.1 33.7 1.0
CB A:CYS177 3.2 39.2 1.0
CB A:CYS184 3.2 34.8 1.0
CG A:HIS157 3.2 29.6 1.0
CB A:CYS179 3.3 38.2 1.0
CB A:HIS157 3.6 31.8 1.0
CA A:HIS157 4.0 32.1 1.0
N A:CYS179 4.2 40.5 1.0
NE2 A:HIS157 4.2 31.2 1.0
CD2 A:HIS157 4.3 30.1 1.0
CA A:CYS179 4.3 39.7 1.0
O A:GLY156 4.4 33.8 1.0
CA A:CYS177 4.6 42.2 1.0
CB A:LYS181 4.6 40.4 1.0
CA A:CYS184 4.7 34.0 1.0
N A:HIS157 4.9 30.7 1.0
C A:HIS157 4.9 32.7 1.0
C A:CYS177 4.9 42.5 1.0
CB A:ASP186 4.9 37.6 1.0
NH2 A:ARG159 4.9 38.7 1.0
N A:LYS181 5.0 40.2 1.0
C A:GLY156 5.0 31.2 1.0

Reference:

G.Minasov, Z.Wawrzak, O.Onopriyenko, T.Skarina, L.Papazisi, A.Savchenko, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). 1.95 Angstrom Resolution Crystal Structure of N-Acetyl-D-Glucosamine Kinase From Vibrio Vulnificus. To Be Published.
Page generated: Sat Oct 26 21:21:36 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy