Atomistry » Zinc » PDB 6a57-6agg » 6aef
Atomistry »
  Zinc »
    PDB 6a57-6agg »
      6aef »

Zinc in PDB 6aef: PAPA2 Acyl Transferase

Protein crystallography data

The structure of PAPA2 Acyl Transferase, PDB code: 6aef was solved by S.Chaudhary, V.Rao, V.Panchal, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.71 / 2.16
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 74.707, 100.668, 128.927, 90.00, 90.00, 90.00
R / Rfree (%) 19.8 / 23.2

Zinc Binding Sites:

The binding sites of Zinc atom in the PAPA2 Acyl Transferase (pdb code 6aef). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the PAPA2 Acyl Transferase, PDB code: 6aef:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6aef

Go back to Zinc Binding Sites List in 6aef
Zinc binding site 1 out of 2 in the PAPA2 Acyl Transferase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of PAPA2 Acyl Transferase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn501

b:28.9
occ:1.00
NE2 B:HIS21 2.0 43.8 1.0
NE2 B:HIS135 2.0 40.2 1.0
NE2 B:HIS124 2.2 42.9 1.0
SG B:CYS19 2.4 27.4 1.0
HB3 B:CYS19 2.7 31.8 1.0
CE1 B:HIS21 2.9 43.4 1.0
CE1 B:HIS135 3.0 39.0 1.0
CD2 B:HIS21 3.0 40.9 1.0
CB B:CYS19 3.0 26.5 1.0
CD2 B:HIS135 3.0 37.9 1.0
CE1 B:HIS124 3.0 42.3 1.0
HE1 B:HIS21 3.1 52.1 1.0
HE1 B:HIS124 3.2 50.8 1.0
HE1 B:HIS135 3.2 46.8 1.0
CD2 B:HIS124 3.2 41.9 1.0
HD2 B:HIS21 3.2 49.1 1.0
HD2 B:HIS135 3.2 45.5 1.0
HB2 B:CYS19 3.4 31.8 1.0
HD22 B:LEU148 3.4 41.6 1.0
HD2 B:HIS124 3.4 50.3 1.0
ND1 B:HIS21 4.0 43.9 1.0
HH B:TYR161 4.0 31.2 1.0
ND1 B:HIS135 4.1 38.8 1.0
CG B:HIS21 4.1 40.1 1.0
CG B:HIS135 4.1 38.9 1.0
ND1 B:HIS124 4.2 42.9 1.0
HD13 B:LEU148 4.2 42.2 1.0
CD2 B:LEU148 4.3 34.7 1.0
CG B:HIS124 4.3 41.0 1.0
HD21 B:LEU148 4.4 41.6 1.0
CA B:CYS19 4.4 25.5 1.0
HE1 B:MET127 4.7 42.2 1.0
C B:CYS19 4.7 28.9 1.0
OH B:TYR161 4.7 26.0 1.0
HD1 B:HIS21 4.8 52.7 1.0
HD23 B:LEU148 4.8 41.6 1.0
HA B:CYS19 4.8 30.6 1.0
HD1 B:HIS135 4.8 46.6 1.0
HB3 B:LEU148 4.9 32.5 1.0
CD1 B:LEU148 4.9 35.2 1.0
O B:CYS19 5.0 29.1 1.0
HD1 B:HIS124 5.0 51.5 1.0
HD11 B:LEU148 5.0 42.2 1.0

Zinc binding site 2 out of 2 in 6aef

Go back to Zinc Binding Sites List in 6aef
Zinc binding site 2 out of 2 in the PAPA2 Acyl Transferase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of PAPA2 Acyl Transferase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn503

b:44.5
occ:1.00
NE2 A:HIS21 2.0 48.2 1.0
NE2 A:HIS135 2.0 42.0 1.0
NE2 A:HIS124 2.1 50.2 1.0
SG A:CYS19 2.3 30.2 1.0
HB3 A:CYS19 2.7 35.2 1.0
CE1 A:HIS21 2.9 44.2 1.0
CE1 A:HIS135 3.0 38.2 1.0
HE1 A:HIS21 3.0 53.0 1.0
CB A:CYS19 3.0 29.3 1.0
CD2 A:HIS124 3.0 43.1 1.0
CD2 A:HIS135 3.0 37.4 1.0
CD2 A:HIS21 3.1 41.5 1.0
HD2 A:HIS124 3.1 51.7 1.0
HE1 A:HIS135 3.2 45.9 1.0
CE1 A:HIS124 3.2 43.6 1.0
HD2 A:HIS135 3.2 44.9 1.0
HB2 A:CYS19 3.3 35.2 1.0
HD2 A:HIS21 3.3 49.8 1.0
HD22 A:LEU148 3.4 40.0 1.0
HE1 A:HIS124 3.4 52.4 1.0
ND1 A:HIS21 4.0 43.7 1.0
HH A:TYR161 4.1 36.4 1.0
ND1 A:HIS135 4.1 36.7 1.0
CG A:HIS135 4.1 37.2 1.0
CG A:HIS21 4.1 40.7 1.0
CG A:HIS124 4.2 44.4 1.0
ND1 A:HIS124 4.2 44.8 1.0
CD2 A:LEU148 4.3 33.3 1.0
HD21 A:LEU148 4.3 40.0 1.0
CA A:CYS19 4.4 28.8 1.0
HD13 A:LEU148 4.4 38.5 1.0
HE1 A:MET127 4.6 48.2 1.0
C A:CYS19 4.7 30.0 1.0
OH A:TYR161 4.7 30.3 1.0
HD1 A:HIS21 4.8 52.5 1.0
HD23 A:LEU148 4.8 40.0 1.0
HA A:CYS19 4.8 34.6 1.0
HD1 A:HIS135 4.8 44.1 1.0
O A:CYS19 5.0 31.5 1.0

Reference:

V.Panchal, N.Jatana, A.Malik, B.Taneja, R.Pal, A.Bhatt, G.S.Besra, L.Thukral, S.Chaudhary, V.Rao. A Novel Mutation Alters the Stability of PAPA2 Resulting in the Complete Abrogation of Sulfolipids in Clinical Mycobacterial Strains Faseb Bioadv 2019.
ISSN: ISSN 2573-9832
DOI: 10.1096/FBA.2018-00039
Page generated: Mon Oct 28 17:29:21 2024

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy