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Zinc in PDB 6m0j: Crystal Structure of 2019-Ncov Spike Receptor-Binding Domain Bound with ACE2

Enzymatic activity of Crystal Structure of 2019-Ncov Spike Receptor-Binding Domain Bound with ACE2

All present enzymatic activity of Crystal Structure of 2019-Ncov Spike Receptor-Binding Domain Bound with ACE2:
3.4.17.23;

Protein crystallography data

The structure of Crystal Structure of 2019-Ncov Spike Receptor-Binding Domain Bound with ACE2, PDB code: 6m0j was solved by X.Wang, J.Lan, J.Ge, J.Yu, S.Shan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 53.11 / 2.45
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 104.670, 104.670, 228.720, 90.00, 90.00, 90.00
R / Rfree (%) 19.6 / 23.8

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of 2019-Ncov Spike Receptor-Binding Domain Bound with ACE2 (pdb code 6m0j). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of 2019-Ncov Spike Receptor-Binding Domain Bound with ACE2, PDB code: 6m0j:

Zinc binding site 1 out of 1 in 6m0j

Go back to Zinc Binding Sites List in 6m0j
Zinc binding site 1 out of 1 in the Crystal Structure of 2019-Ncov Spike Receptor-Binding Domain Bound with ACE2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of 2019-Ncov Spike Receptor-Binding Domain Bound with ACE2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn901

b:92.4
occ:1.00
OE1 A:GLU402 2.1 59.5 1.0
NE2 A:HIS378 2.3 53.1 1.0
CE1 A:HIS374 2.3 59.5 1.0
CD A:GLU402 3.0 63.3 1.0
ND1 A:HIS374 3.1 54.7 1.0
CD2 A:HIS378 3.2 48.8 1.0
OE2 A:GLU402 3.2 73.3 1.0
CE1 A:HIS378 3.3 49.2 1.0
NE2 A:HIS374 3.4 64.3 1.0
OE2 A:GLU375 3.7 63.7 1.0
O A:HOH1057 4.2 67.3 1.0
CG A:HIS374 4.4 52.9 1.0
CG A:HIS378 4.4 50.8 1.0
CG A:GLU402 4.4 54.5 1.0
ND1 A:HIS378 4.4 55.1 1.0
CD A:GLU375 4.4 55.6 1.0
OE1 A:GLU375 4.4 57.6 1.0
CD2 A:HIS374 4.5 62.0 1.0

Reference:

X.Wang, X.Wang, J.Lan, J.Ge, J.Yu, S.Shan. N/A N/A.
Page generated: Tue Oct 29 02:51:57 2024

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