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Zinc in PDB, part 149 (files: 5921-5960), PDB 3kmd-3kz4

Experimental structures of coordination spheres of Zinc (Zn) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Zinc atoms. PDB files: 5921-5960 (PDB 3kmd-3kz4).
  1. 3kmd (Zn: 4) - Crystal Structure of the P53 Core Domain Bound to A Full Consensus Site As A Self-Assembled Tetramer
  2. 3kme (Zn: 2) - Crystal Structure of Catalytic Domain of Tace with Phenyl- Pyrrolidinyl-Tartrate Inhibitor
  3. 3kmp (Zn: 2) - Crystal Structure of SMAD1-MH1/Dna Complex
  4. 3kn2 (Zn: 2) - Hcv NS3 Protease Domain with Ketoamide Inhibitor
  5. 3kne (Zn: 1) - Carbonic Anhydrase II H64C Mutant in Complex with An in Situ Formed Triazole
    Other atoms: Hg (1);
  6. 3knr (Zn: 6) - Bacillus Cereus Metallo-Beta-Lactamase CYS221ASP Mutant, 1 Mm Zn(II)
  7. 3kns (Zn: 8) - Bacillus Cereus Metallo-Beta-Lactamase CYS221ASP Mutant, 20 Mm Zn(II)
  8. 3knv (Zn: 3) - Crystal Structure of the Ring and First Zinc Finger Domains of TRAF2
  9. 3knx (Zn: 2) - Hcv NS3 Protease Domain with P1-P3 Macrocyclic Ketoamide Inhibitor
  10. 3kq6 (Zn: 3) - Enhancing the Therapeutic Properties of A Protein By A Designed Zinc- Binding Site, Structural Principles of A Novel Long-Acting Insulin Analog
    Other atoms: Cl (2);
  11. 3kqi (Zn: 2) - Crystal Structure of PHF2 Phd Domain Complexed with H3K4ME3 Peptide
    Other atoms: Mg (2); Cl (1);
  12. 3kqx (Zn: 12) - Structure of A Protease 1
  13. 3kqz (Zn: 24) - Structure of A Protease 2
  14. 3kr4 (Zn: 12) - Structure of A Protease 3
    Other atoms: Mg (12);
  15. 3kr5 (Zn: 24) - Structure of A Protease 4
  16. 3kr7 (Zn: 1) - Human Tankyrase 2 - Catalytic Parp Domain
  17. 3kr8 (Zn: 2) - Human Tankyrase 2 - Catalytic Parp Domain in Complex with An Inhibitor XAV939
    Other atoms: F (6);
  18. 3krv (Zn: 1) - The Structure of Potential Metal-Dependent Hydrolase with Cyclase Activity
    Other atoms: Cl (8);
  19. 3kry (Zn: 8) - Crystal Structure of Mmp-13 in Complex with Sc-78080
    Other atoms: F (12); Ca (8);
  20. 3ks3 (Zn: 1) - High Resolution Structure of Human Carbonic Anhydrase II at 0.9 A
  21. 3ksl (Zn: 1) - Structure of Fpt Bound to Datfp-Dh-Gpp
    Other atoms: F (6); Mg (1);
  22. 3ksq (Zn: 1) - Discovery of C-Imidazole Azaheptapyridine Fpt Inhibitors
    Other atoms: Mg (1); Cl (1);
  23. 3ksv (Zn: 1) - Hypothetical Protein From Leishmania Major
  24. 3kui (Zn: 1) - Crystal Structure of C-Terminal Domain of PABPC1 in Complex with Binding Region of ERF3A
  25. 3kv4 (Zn: 2) - Structure of PHF8 in Complex with Histone H3
    Other atoms: Ni (1); Fe (1);
  26. 3kv5 (Zn: 4) - Structure of KIAA1718, Human Jumonji Demethylase, in Complex with N-Oxalylglycine
    Other atoms: Fe (3);
  27. 3kv6 (Zn: 4) - Structure of KIAA1718, Human Jumonji Demethylase, in Complex with Alpha-Ketoglutarate
    Other atoms: Fe (2);
  28. 3kve (Zn: 4) - Structure of Native L-Amino Acid Oxidase From Vipera Ammodytes Ammodytes: Stabilization of the Quaternary Structure By Divalent Ions and Structural Changes in the Dynamic Active Site
  29. 3kvt (Zn: 1) - Tetramerization Domain From AKV3.1 (Shaw-Subfamily) Voltage- Gated Potassium Channel
  30. 3kwa (Zn: 1) - Polyamines Inhibit Carbonic Anhydrases
    Other atoms: Hg (1);
  31. 3kwc (Zn: 6) - Oxidized, Active Structure of the Beta-Carboxysomal Gamma- Carbonic Anhydrase, Ccmm
    Other atoms: Cl (2);
  32. 3kwd (Zn: 1) - Inactive Truncation of the Beta-Carboxysomal Gamma-Carbonic Anhydrase, Ccmm, Form 1
    Other atoms: Cl (2);
  33. 3kwe (Zn: 1) - Inactive Truncation of the Beta-Carboxysomal Gamma-Carbonic Anhydrase, Ccmm, Form 2
    Other atoms: Mg (1); Cl (2);
  34. 3kwo (Zn: 26) - Crystal Structure of Putative Bacterioferritin From Campylobacter Jejuni
  35. 3ky9 (Zn: 4) - Autoinhibited VAV1
  36. 3kya (Zn: 9) - Crystal Structure of Putative Phosphatase (NP_812416.1) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.77 A Resolution
    Other atoms: Cl (2);
  37. 3kyc (Zn: 1) - Human Sumo E1 Complex with A SUMO1-Amp Mimic
  38. 3kyd (Zn: 1) - Human Sumo E1~SUMO1-Amp Tetrahedral Intermediate Mimic
  39. 3kz0 (Zn: 7) - Mcl-1 Complex with Mcl-1-Specific Selected Peptide
  40. 3kz4 (Zn: 5) - Crystal Structure of the Rotavirus Double Layered Particle
Page generated: Mon Dec 15 11:29:52 2025

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