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Zinc in PDB, part 549 (files: 21921-21960), PDB 8y00-8yqy

Experimental structures of coordination spheres of Zinc (Zn) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Zinc atoms. PDB files: 21921-21960 (PDB 8y00-8yqy).
  1. 8y00 (Zn: 6) - Structure of A Xylanase Xyl-1 M4 Mutant E175A in Complex with Xylotriose
  2. 8y0e (Zn: 6) - Asfv Rnap M1249L C-Tail Occupied COMPLEX4 (MCOC4)
    Other atoms: Mg (1);
  3. 8y16 (Zn: 3) - Cryo-Em Structure of Sars-Cov-2 Omicron Jn.1 Spike Protein in Complex with Human ACE2
  4. 8y18 (Zn: 1) - Cryo-Em Structure of Sars-Cov-2 Omicron Jn.1 Rbd in Complex with Human ACE2 (Local Refinement From the Spike Protein)
  5. 8y1y (Zn: 1) - Crystal Structure of the Mcl-1 in Complex with A Long BH3 Peptide of Bak
  6. 8y2o (Zn: 1) - The Cryo-Em Structure of Human Trna Methyltransferase FTSJ1-Thada with Substrate Trna and S-Adenosyl Homocysteine (Sah)
    Other atoms: Mg (7);
  7. 8y6a (Zn: 1) - Cryo-Em Structure of Sars-Cov-2 Omicron Ba.2.86 Rbd in Complex with Human ACE2 and S309 Fab
  8. 8y6k (Zn: 2) - Cryo-Em Structure of Full-Length MICAL1 in the Autoinhibited State
  9. 8y7e (Zn: 4) - Cryo-Em Structure of the Human Minor Pre-B Complex (Pre-Precatalytic Spliceosome) U12 Snrnp Part
  10. 8y7w (Zn: 1) - Thymidine Kinase From Staphylococcus Aureus(Col Strain)
    Other atoms: Cl (2);
  11. 8y9b (Zn: 1) - TCDB1 in Complex with Mini-Binder
  12. 8y9c (Zn: 1) - De Novo Design Mini-Binder in Complex with TCDB4
  13. 8yaf (Zn: 6) - SOD1, NANOBODY1 and NANOBODY2 Complex
  14. 8yag (Zn: 16) - Cryo-Electron Microscopic Structure of An Amide Hydrolase From Pseudoxanthomonas Wuyuanensis
  15. 8yak (Zn: 16) - Cryo-Em Structure and Rational Engineering of A Novel Efficient Ochratoxin A-Detoxifying Amidohydrolase
    Other atoms: Cl (8);
  16. 8yat (Zn: 4) - SOD1, NANOBODY1, NANOBODY2 and NANOBODY3 Complex
  17. 8yb6 (Zn: 2) - Type I-Ehnh Cascade Complex
  18. 8yf2 (Zn: 1) - Cryo-Em Structure of Sars-Cov-2 Prototype Rbd in Complex with Raccoon Dog ACE2 (Local Refinement)
  19. 8yfp (Zn: 2) - Chito Oligosaccharide Deacetylase From Vibrio Campbellii (Vhcod)
    Other atoms: Ca (3); Mg (2);
  20. 8yfq (Zn: 8) - Cryo Em Structure of Komagataella Phaffii Rnapii-RAT1-RAI1 Pre- Termination Complex
    Other atoms: Mg (1);
  21. 8yfr (Zn: 8) - Cryo Em Structure of Komagataella Phaffii RAT1-RAI1 Complex Bound Within the Rnapii Cleft
    Other atoms: Mg (1);
  22. 8yft (Zn: 1) - Cryo-Em Structure of Sars-Cov-2 Alpha Variant Spike Protein in Complex with Raccoon Dog ACE2 (Local Refinement)
  23. 8yh4 (Zn: 4) - Chito Oligosaccharide Deacetylase From Vibrio Campbellii (Vhcod) in Complex with Chitosanbiose (Glcn)2
    Other atoms: Na (7);
  24. 8yha (Zn: 2) - Type I-Ehnh Cascade-Ssdna Complex
  25. 8yhd (Zn: 11) - Cryo-Em Structure of Ctr-Bound Type 7 Crispr-Cas Complex at Post-State 1
  26. 8yhe (Zn: 9) - Cryo-Em Structure of Ctr-Bound Type 7 Crispr-Cas Complex at Post-State 2
  27. 8yib (Zn: 2) - Staphylococcus Aureus Lipase -Psa Complex - Covalent Bonding State
    Other atoms: Ca (2); Mg (1); Cl (4);
  28. 8yj6 (Zn: 1) - Characerization of A Novel Format Scfvxvhh Single-Chain Biparatopic Antibody Against A Metal Binding Protein, Mtsa
  29. 8yj7 (Zn: 4) - Characerization of A Novel Format Scfvxvhh Single-Chain Biparatopic Antibody Against A Metal Binding Protein, Mtsa
  30. 8yj8 (Zn: 2) - Characerization of A Novel Format Scfvxvhh Single-Chain Biparatopic Antibody Against A Metal Binding Protein, Mtsa
  31. 8yjb (Zn: 2) - Cryo-Em Structure of the Human DSS1-Intac Complex
    Other atoms: Mn (2);
  32. 8yjx (Zn: 2) - Crystal Structure of Penicillin-Binding Protein 2 (PBP2) From Campylobacter Jejuni
  33. 8yle (Zn: 2) - Crystal Structure of Werner Syndrome Helicase Complexed with Amp-Pcp
  34. 8ymz (Zn: 6) - Structure of ZBTB43 in Complex with Caca Containing B-Form Dna
  35. 8yoz (Zn: 2) - Crystal Structure of the Small Zinc-Finger Protein Zifs (TTHA0897) From Thermus Thermophilus HB8.
  36. 8yqt (Zn: 6) - African Swine Fever Virus Rna Polymerase-M1249L COMPLEX2
    Other atoms: Mg (1);
  37. 8yqu (Zn: 9) - African Swine Fever Virus Rna Polymerase-M1249L COMPLEX1
    Other atoms: Mg (1);
  38. 8yqv (Zn: 4) - African Swine Fever Virus Rna Polymerase Core
    Other atoms: Mg (1);
  39. 8yqw (Zn: 9) - Asfv Rna Polymerase-M1249L COMPLEX3
    Other atoms: Mg (1);
  40. 8yqy (Zn: 9) - Asfv Rna Polymerase-M1249L Complex Complete
    Other atoms: Mg (1);
Page generated: Mon Dec 15 11:45:19 2025

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