Zinc in PDB 9jp7: 4,5-Dihydroxyphthalate Decarboxylase From Comamonas Testosteroni (Strain Dsm 14576 / Kf-1)

Enzymatic activity of 4,5-Dihydroxyphthalate Decarboxylase From Comamonas Testosteroni (Strain Dsm 14576 / Kf-1)

All present enzymatic activity of 4,5-Dihydroxyphthalate Decarboxylase From Comamonas Testosteroni (Strain Dsm 14576 / Kf-1):
4.1.1.55;

Protein crystallography data

The structure of 4,5-Dihydroxyphthalate Decarboxylase From Comamonas Testosteroni (Strain Dsm 14576 / Kf-1), PDB code: 9jp7 was solved by K.A.Kumar, P.Kumar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.22 / 3.05
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 128.045, 270.201, 113.627, 90, 90, 90
R / Rfree (%) 26.4 / 33.5

Other elements in 9jp7:

The structure of 4,5-Dihydroxyphthalate Decarboxylase From Comamonas Testosteroni (Strain Dsm 14576 / Kf-1) also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the 4,5-Dihydroxyphthalate Decarboxylase From Comamonas Testosteroni (Strain Dsm 14576 / Kf-1) (pdb code 9jp7). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the 4,5-Dihydroxyphthalate Decarboxylase From Comamonas Testosteroni (Strain Dsm 14576 / Kf-1), PDB code: 9jp7:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 9jp7

Go back to Zinc Binding Sites List in 9jp7
Zinc binding site 1 out of 3 in the 4,5-Dihydroxyphthalate Decarboxylase From Comamonas Testosteroni (Strain Dsm 14576 / Kf-1)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of 4,5-Dihydroxyphthalate Decarboxylase From Comamonas Testosteroni (Strain Dsm 14576 / Kf-1) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:74.6
occ:1.00
 N A:THR114 3.0 15.2 1.0
OG1 A:THR114 3.3 15.2 1.0
CB A:THR114 3.6 14.9 1.0
CA A:THR114 3.8 15.2 1.0
OG A:SER57 3.8 8.9 1.0
C A:LEU113 3.9 15.6 1.0
CB A:LEU113 4.0 18.0 1.0
CA A:LEU113 4.0 16.5 1.0
N A:ALA115 4.1 15.9 1.0
CD2 A:LEU113 4.3 18.9 1.0
C A:THR114 4.5 15.4 1.0
O A:HOH542 4.5 28.6 1.0
CG A:LEU113 4.6 18.8 1.0
CE2 A:PHE42 4.6 8.5 1.0
CB A:SER57 4.6 8.5 1.0
NE2 A:HIS222 4.8 10.6 1.0
CD1 A:LEU113 4.8 19.1 1.0
CD2 A:PHE42 4.8 8.4 1.0
O A:LEU113 4.9 15.0 1.0

Zinc binding site 2 out of 3 in 9jp7

Go back to Zinc Binding Sites List in 9jp7
Zinc binding site 2 out of 3 in the 4,5-Dihydroxyphthalate Decarboxylase From Comamonas Testosteroni (Strain Dsm 14576 / Kf-1)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of 4,5-Dihydroxyphthalate Decarboxylase From Comamonas Testosteroni (Strain Dsm 14576 / Kf-1) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn401

b:67.2
occ:1.00
 OG1 B:THR114 3.3 15.9 1.0
N B:THR114 3.3 14.0 1.0
OG B:SER57 3.6 12.8 1.0
CB B:THR114 3.7 15.5 1.0
CA B:THR114 4.0 14.6 1.0
C B:LEU113 4.2 14.5 1.0
CE2 B:PHE42 4.3 28.3 1.0
CA B:LEU113 4.3 14.5 1.0
CB B:SER57 4.4 11.8 1.0
CG B:LEU113 4.4 15.2 1.0
CB B:LEU113 4.4 15.0 1.0
NE2 B:HIS222 4.4 10.9 1.0
N B:ALA115 4.5 15.0 1.0
CD2 B:PHE42 4.5 28.4 1.0
CD2 B:HIS222 4.7 10.7 1.0
C B:THR114 4.8 14.8 1.0
CA B:SER57 4.9 11.7 1.0

Zinc binding site 3 out of 3 in 9jp7

Go back to Zinc Binding Sites List in 9jp7
Zinc binding site 3 out of 3 in the 4,5-Dihydroxyphthalate Decarboxylase From Comamonas Testosteroni (Strain Dsm 14576 / Kf-1)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of 4,5-Dihydroxyphthalate Decarboxylase From Comamonas Testosteroni (Strain Dsm 14576 / Kf-1) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn401

b:68.8
occ:1.00
 N C:THR114 3.1 27.1 1.0
OG1 C:THR114 3.2 27.6 1.0
CB C:THR114 3.5 26.2 1.0
OG C:SER57 3.6 43.6 1.0
CA C:THR114 3.8 27.6 1.0
C C:LEU113 4.1 28.9 1.0
N C:ALA115 4.2 27.5 1.0
CA C:LEU113 4.3 29.4 1.0
CB C:LEU113 4.3 29.4 1.0
CB C:SER57 4.4 39.9 1.0
CE2 C:PHE42 4.5 27.7 1.0
CD2 C:LEU113 4.5 30.3 1.0
NE2 C:HIS222 4.5 34.7 1.0
C C:THR114 4.6 27.9 1.0
CD2 C:PHE42 4.7 25.7 1.0
CD2 C:HIS222 4.8 33.7 1.0
CG C:LEU113 4.9 31.4 1.0
CG2 C:THR114 5.0 23.8 1.0
CA C:SER57 5.0 39.0 1.0

Reference:

K.A.Kumar, K.A.Kumar, P.Kumar. N/A N/A.
Page generated: Wed Nov 13 14:02:13 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy