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Zinc in PDB 9jp7: 4,5-Dihydroxyphthalate Decarboxylase From Comamonas Testosteroni (Strain Dsm 14576 / Kf-1)

Enzymatic activity of 4,5-Dihydroxyphthalate Decarboxylase From Comamonas Testosteroni (Strain Dsm 14576 / Kf-1)

All present enzymatic activity of 4,5-Dihydroxyphthalate Decarboxylase From Comamonas Testosteroni (Strain Dsm 14576 / Kf-1):
4.1.1.55;

Protein crystallography data

The structure of 4,5-Dihydroxyphthalate Decarboxylase From Comamonas Testosteroni (Strain Dsm 14576 / Kf-1), PDB code: 9jp7 was solved by K.A.Kumar, P.Kumar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.22 / 3.05
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 128.045, 270.201, 113.627, 90, 90, 90
R / Rfree (%) 26.4 / 33.5

Other elements in 9jp7:

The structure of 4,5-Dihydroxyphthalate Decarboxylase From Comamonas Testosteroni (Strain Dsm 14576 / Kf-1) also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the 4,5-Dihydroxyphthalate Decarboxylase From Comamonas Testosteroni (Strain Dsm 14576 / Kf-1) (pdb code 9jp7). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the 4,5-Dihydroxyphthalate Decarboxylase From Comamonas Testosteroni (Strain Dsm 14576 / Kf-1), PDB code: 9jp7:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 9jp7

Go back to Zinc Binding Sites List in 9jp7
Zinc binding site 1 out of 3 in the 4,5-Dihydroxyphthalate Decarboxylase From Comamonas Testosteroni (Strain Dsm 14576 / Kf-1)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of 4,5-Dihydroxyphthalate Decarboxylase From Comamonas Testosteroni (Strain Dsm 14576 / Kf-1) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:74.6
occ:1.00
 N A:THR114 3.0 15.2 1.0
OG1 A:THR114 3.3 15.2 1.0
CB A:THR114 3.6 14.9 1.0
CA A:THR114 3.8 15.2 1.0
OG A:SER57 3.8 8.9 1.0
C A:LEU113 3.9 15.6 1.0
CB A:LEU113 4.0 18.0 1.0
CA A:LEU113 4.0 16.5 1.0
N A:ALA115 4.1 15.9 1.0
CD2 A:LEU113 4.3 18.9 1.0
C A:THR114 4.5 15.4 1.0
O A:HOH542 4.5 28.6 1.0
CG A:LEU113 4.6 18.8 1.0
CE2 A:PHE42 4.6 8.5 1.0
CB A:SER57 4.6 8.5 1.0
NE2 A:HIS222 4.8 10.6 1.0
CD1 A:LEU113 4.8 19.1 1.0
CD2 A:PHE42 4.8 8.4 1.0
O A:LEU113 4.9 15.0 1.0

Zinc binding site 2 out of 3 in 9jp7

Go back to Zinc Binding Sites List in 9jp7
Zinc binding site 2 out of 3 in the 4,5-Dihydroxyphthalate Decarboxylase From Comamonas Testosteroni (Strain Dsm 14576 / Kf-1)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of 4,5-Dihydroxyphthalate Decarboxylase From Comamonas Testosteroni (Strain Dsm 14576 / Kf-1) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn401

b:67.2
occ:1.00
 OG1 B:THR114 3.3 15.9 1.0
N B:THR114 3.3 14.0 1.0
OG B:SER57 3.6 12.8 1.0
CB B:THR114 3.7 15.5 1.0
CA B:THR114 4.0 14.6 1.0
C B:LEU113 4.2 14.5 1.0
CE2 B:PHE42 4.3 28.3 1.0
CA B:LEU113 4.3 14.5 1.0
CB B:SER57 4.4 11.8 1.0
CG B:LEU113 4.4 15.2 1.0
CB B:LEU113 4.4 15.0 1.0
NE2 B:HIS222 4.4 10.9 1.0
N B:ALA115 4.5 15.0 1.0
CD2 B:PHE42 4.5 28.4 1.0
CD2 B:HIS222 4.7 10.7 1.0
C B:THR114 4.8 14.8 1.0
CA B:SER57 4.9 11.7 1.0

Zinc binding site 3 out of 3 in 9jp7

Go back to Zinc Binding Sites List in 9jp7
Zinc binding site 3 out of 3 in the 4,5-Dihydroxyphthalate Decarboxylase From Comamonas Testosteroni (Strain Dsm 14576 / Kf-1)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of 4,5-Dihydroxyphthalate Decarboxylase From Comamonas Testosteroni (Strain Dsm 14576 / Kf-1) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn401

b:68.8
occ:1.00
 N C:THR114 3.1 27.1 1.0
OG1 C:THR114 3.2 27.6 1.0
CB C:THR114 3.5 26.2 1.0
OG C:SER57 3.6 43.6 1.0
CA C:THR114 3.8 27.6 1.0
C C:LEU113 4.1 28.9 1.0
N C:ALA115 4.2 27.5 1.0
CA C:LEU113 4.3 29.4 1.0
CB C:LEU113 4.3 29.4 1.0
CB C:SER57 4.4 39.9 1.0
CE2 C:PHE42 4.5 27.7 1.0
CD2 C:LEU113 4.5 30.3 1.0
NE2 C:HIS222 4.5 34.7 1.0
C C:THR114 4.6 27.9 1.0
CD2 C:PHE42 4.7 25.7 1.0
CD2 C:HIS222 4.8 33.7 1.0
CG C:LEU113 4.9 31.4 1.0
CG2 C:THR114 5.0 23.8 1.0
CA C:SER57 5.0 39.0 1.0

Reference:

K.A.Kumar, K.A.Kumar, P.Kumar. N/A N/A.
Page generated: Wed Nov 13 14:02:13 2024

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