Zinc in PDB 8yt2: Crystal Structure of Acmsd Mutant W194A

The structure of Crystal Structure of Acmsd Mutant W194A, PDB code: 8yt2 was solved by Y.Yang, A.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.10 / 2.02
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	104.002, 151.647, 154.105, 90, 90, 90
R / Rfree (%)	19.4 / 23.1

The binding sites of Zinc atom in the Crystal Structure of Acmsd Mutant W194A (pdb code 8yt2). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Crystal Structure of Acmsd Mutant W194A, PDB code: 8yt2:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the Crystal Structure of Acmsd Mutant W194A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Acmsd Mutant W194A within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:22.6 occ:1.00 NE2 A:HIS11 2.2 21.9 1.0 OD1 A:ASP294 2.2 22.1 1.0 NE2 A:HIS9 2.2 17.0 1.0 NE2 A:HIS177 2.3 17.8 1.0 O A:HOH629 2.3 24.4 1.0 CD2 A:HIS177 3.0 22.2 1.0 CD2 A:HIS11 3.1 23.0 1.0 CG A:ASP294 3.1 32.0 1.0 CE1 A:HIS9 3.1 19.1 1.0 CE1 A:HIS11 3.2 22.9 1.0 CD2 A:HIS9 3.2 19.5 1.0 OD2 A:ASP294 3.4 34.4 1.0 CE1 A:HIS177 3.4 24.4 1.0 CG A:HIS177 4.2 19.9 1.0 CG A:HIS11 4.2 25.8 1.0 NE2 A:HIS228 4.2 22.5 1.0 ND1 A:HIS9 4.3 22.3 1.0 ND1 A:HIS11 4.3 22.4 1.0 CG A:HIS9 4.3 22.2 1.0 CB A:ASP294 4.4 23.4 1.0 ND1 A:HIS177 4.4 22.2 1.0 CE1 A:HIS228 4.6 28.8 1.0 CA A:ASP294 4.6 18.8 1.0 O A:HOH743 4.6 45.3 1.0

Zinc binding site 2 out of 3 in the Crystal Structure of Acmsd Mutant W194A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Acmsd Mutant W194A within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn401 b:24.9 occ:1.00 OD1 B:ASP294 2.1 28.2 1.0 NE2 B:HIS11 2.2 25.5 1.0 NE2 B:HIS9 2.2 19.0 1.0 O B:HOH614 2.3 24.8 1.0 NE2 B:HIS177 2.3 24.9 1.0 CD2 B:HIS177 2.9 21.3 1.0 CD2 B:HIS11 3.0 22.6 1.0 CE1 B:HIS9 3.1 23.2 1.0 CG B:ASP294 3.1 28.5 1.0 CD2 B:HIS9 3.2 19.6 1.0 CE1 B:HIS11 3.3 26.8 1.0 OD2 B:ASP294 3.5 30.1 1.0 CE1 B:HIS177 3.5 28.0 1.0 NE2 B:HIS228 4.2 24.7 1.0 CG B:HIS177 4.2 26.4 1.0 CG B:HIS11 4.2 26.1 1.0 ND1 B:HIS9 4.2 21.2 1.0 ND1 B:HIS11 4.3 26.4 1.0 CG B:HIS9 4.3 22.5 1.0 ND1 B:HIS177 4.4 24.7 1.0 CB B:ASP294 4.4 20.4 1.0 CA B:ASP294 4.7 20.9 1.0 CE1 B:HIS228 4.8 27.3 1.0 O B:HOH689 5.0 38.6 1.0

Zinc binding site 3 out of 3 in the Crystal Structure of Acmsd Mutant W194A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of Acmsd Mutant W194A within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn401 b:39.6 occ:1.00 OD1 C:ASP294 2.1 35.3 1.0 NE2 C:HIS177 2.3 34.0 1.0 NE2 C:HIS11 2.4 41.6 1.0 NE2 C:HIS9 2.4 39.8 1.0 O C:HOH549 2.6 52.3 1.0 CD2 C:HIS177 2.9 34.4 1.0 CG C:ASP294 3.0 41.3 1.0 CD2 C:HIS11 3.0 42.3 1.0 CE1 C:HIS9 3.2 34.9 1.0 OD2 C:ASP294 3.3 42.1 1.0 CD2 C:HIS9 3.4 38.6 1.0 CE1 C:HIS11 3.4 50.5 1.0 CE1 C:HIS177 3.5 38.4 1.0 CG C:HIS177 4.2 35.5 1.0 NE2 C:HIS228 4.2 39.8 1.0 CG C:HIS11 4.2 46.5 1.0 ND1 C:HIS9 4.3 39.1 1.0 CB C:ASP294 4.4 36.1 1.0 CG C:HIS9 4.4 35.6 1.0 ND1 C:HIS11 4.4 47.7 1.0 ND1 C:HIS177 4.4 36.8 1.0 CE1 C:HIS228 4.5 39.9 1.0 CA C:ASP294 4.7 40.5 1.0 O C:HOH637 4.8 47.4 1.0 O C:HOH643 4.9 46.6 1.0

Y.Yang, A.Liu. Crystal Structure of Acmsd Mutant W194A To Be Published.