Zinc in PDB 8y18: Cryo-Em Structure of Sars-Cov-2 Omicron Jn.1 Rbd in Complex with Human ACE2 (Local Refinement From the Spike Protein)

Enzymatic activity of Cryo-Em Structure of Sars-Cov-2 Omicron Jn.1 Rbd in Complex with Human ACE2 (Local Refinement From the Spike Protein)

All present enzymatic activity of Cryo-Em Structure of Sars-Cov-2 Omicron Jn.1 Rbd in Complex with Human ACE2 (Local Refinement From the Spike Protein):
3.4.17.23;

Zinc Binding Sites:

The binding sites of Zinc atom in the Cryo-Em Structure of Sars-Cov-2 Omicron Jn.1 Rbd in Complex with Human ACE2 (Local Refinement From the Spike Protein) (pdb code 8y18). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Cryo-Em Structure of Sars-Cov-2 Omicron Jn.1 Rbd in Complex with Human ACE2 (Local Refinement From the Spike Protein), PDB code: 8y18:

Zinc binding site 1 out of 1 in 8y18

Go back to Zinc Binding Sites List in 8y18
Zinc binding site 1 out of 1 in the Cryo-Em Structure of Sars-Cov-2 Omicron Jn.1 Rbd in Complex with Human ACE2 (Local Refinement From the Spike Protein)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Sars-Cov-2 Omicron Jn.1 Rbd in Complex with Human ACE2 (Local Refinement From the Spike Protein) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn701

b:30.0
occ:1.00
NE2 A:HIS378 2.1 69.6 1.0
NE2 A:HIS374 2.1 69.6 1.0
OE2 A:GLU402 2.1 69.6 1.0
OE1 A:GLU402 2.1 69.6 1.0
CD A:GLU402 2.4 69.6 1.0
CD2 A:HIS374 2.6 69.6 1.0
CE1 A:HIS378 3.0 69.6 1.0
CD2 A:HIS378 3.1 69.6 1.0
CE1 A:HIS374 3.1 69.6 1.0
CG A:HIS374 3.7 69.6 1.0
CG A:GLU402 3.8 69.6 1.0
OE2 A:GLU375 3.9 69.6 1.0
ND1 A:HIS374 3.9 69.6 1.0
ND1 A:HIS378 4.1 69.6 1.0
CG A:HIS378 4.2 69.6 1.0
CB A:GLU402 4.6 69.6 1.0
CA A:GLU402 4.6 69.6 1.0
CD A:GLU375 5.0 69.6 1.0
CB A:HIS374 5.0 69.6 1.0

Reference:

L.J.Li, K.Y.Shi, Y.H.Gu, K.F.Liu, G.F.Gao. Spike Structures, Receptor Binding and Immune Escape of Sars-Cov-2 Omicron Recently-Circulating Ba.2.86.1, Jn.1, Eg.5, Eg.5.1 and Hv.1 Sub-Variants To Be Published.
Page generated: Thu Oct 31 13:58:33 2024

Last articles

Zn in 9FD2
Zn in 9GUW
Zn in 9GUX
Zn in 9F7C
Zn in 9GUR
Zn in 9F7A
Zn in 9DDE
Zn in 9DBY
Zn in 9EBZ
Zn in 9DGG
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy