Zinc in PDB 8xn3: Sars-Cov-2 Omicron Hv.1 Rbd in Complex with Human ACE2 (Local Refinement From the Spike Protein)

All present enzymatic activity of Sars-Cov-2 Omicron Hv.1 Rbd in Complex with Human ACE2 (Local Refinement From the Spike Protein):
3.4.17.23;

The binding sites of Zinc atom in the Sars-Cov-2 Omicron Hv.1 Rbd in Complex with Human ACE2 (Local Refinement From the Spike Protein) (pdb code 8xn3). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Sars-Cov-2 Omicron Hv.1 Rbd in Complex with Human ACE2 (Local Refinement From the Spike Protein), PDB code: 8xn3:

Zinc binding site 1 out of 1 in the Sars-Cov-2 Omicron Hv.1 Rbd in Complex with Human ACE2 (Local Refinement From the Spike Protein)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Sars-Cov-2 Omicron Hv.1 Rbd in Complex with Human ACE2 (Local Refinement From the Spike Protein) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn707 b:30.0 occ:1.00 CE1 A:HIS378 2.0 123.1 1.0 CD A:GLU402 2.1 123.1 1.0 NE2 A:HIS378 2.1 123.1 1.0 OE2 A:GLU402 2.1 123.1 1.0 NE2 A:HIS374 2.1 123.1 1.0 OE1 A:GLU402 2.1 123.1 1.0 CD2 A:HIS374 2.7 123.1 1.0 CE1 A:HIS374 3.2 123.1 1.0 CG A:GLU402 3.2 123.1 1.0 ND1 A:HIS378 3.3 123.1 1.0 CD2 A:HIS378 3.4 123.1 1.0 CA A:GLU402 3.5 123.1 1.0 CB A:GLU402 3.8 123.1 1.0 CG A:HIS374 3.9 123.1 1.0 CG A:HIS378 4.0 123.1 1.0 ND1 A:HIS374 4.1 123.1 1.0 O A:GLU402 4.2 123.1 1.0 C A:GLU402 4.4 123.1 1.0 CA A:GLY405 4.4 123.1 1.0 N A:GLU402 4.5 123.1 1.0 O A:HIS401 4.5 123.1 1.0 C A:HIS401 4.8 123.1 1.0 N A:GLY405 4.9 123.1 1.0 O A:HIS374 4.9 123.1 1.0 ND1 A:HIS401 5.0 123.1 1.0

L.J.Li, Z.P.Xu, K.F.Liu, G.F.Gao. Structural Basis of Receptor Binding and Immune Escape For Sars-Cov-2 Omicron Ba.2.86, Eg.5, Eg.5.1 and Hv.1 Sub-Variants To Be Published.