Zinc in PDB 8wqe: Cryo-Em Structure of CUL2-RBX1-Elob-Eloc-FEM1B Bound with the C-Degron of CUX1 (Conformation 1)

Zinc Binding Sites:

The binding sites of Zinc atom in the Cryo-Em Structure of CUL2-RBX1-Elob-Eloc-FEM1B Bound with the C-Degron of CUX1 (Conformation 1) (pdb code 8wqe). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 6 binding sites of Zinc where determined in the Cryo-Em Structure of CUL2-RBX1-Elob-Eloc-FEM1B Bound with the C-Degron of CUX1 (Conformation 1), PDB code: 8wqe:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6;

Zinc binding site 1 out of 6 in 8wqe

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Zinc binding site 1 out of 6 in the Cryo-Em Structure of CUL2-RBX1-Elob-Eloc-FEM1B Bound with the C-Degron of CUX1 (Conformation 1)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of CUL2-RBX1-Elob-Eloc-FEM1B Bound with the C-Degron of CUX1 (Conformation 1) within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Zn200

b:29.0
occ:1.00
 ND1 J:HIS82 2.1 9.0 1.0
SG J:CYS53 2.3 11.2 1.0
SG J:CYS68 2.3 16.9 1.0
SG J:CYS56 2.3 19.8 1.0
CE1 J:HIS82 2.8 9.0 1.0
CB J:CYS68 3.0 16.9 1.0
CG J:HIS82 3.3 9.0 1.0
CB J:CYS53 3.4 11.2 1.0
CB J:CYS56 3.5 19.8 1.0
N J:CYS53 3.7 11.2 1.0
CB J:HIS82 3.9 9.0 1.0
NE2 J:HIS82 4.0 9.0 1.0
CA J:CYS53 4.1 11.2 1.0
CA J:CYS68 4.1 16.9 1.0
N J:CYS56 4.1 19.8 1.0
CD2 J:HIS82 4.3 9.0 1.0
CA J:CYS56 4.4 19.8 1.0
C J:CYS53 4.7 11.2 1.0
O J:CYS53 4.7 11.2 1.0
C J:LEU52 4.9 10.2 1.0
N J:CYS68 4.9 16.9 1.0

Zinc binding site 2 out of 6 in 8wqe

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Zinc binding site 2 out of 6 in the Cryo-Em Structure of CUL2-RBX1-Elob-Eloc-FEM1B Bound with the C-Degron of CUX1 (Conformation 1)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of CUL2-RBX1-Elob-Eloc-FEM1B Bound with the C-Degron of CUX1 (Conformation 1) within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Zn201

b:4.0
occ:1.00
 ND1 J:HIS80 2.1 5.9 1.0
SG J:CYS45 2.3 4.8 1.0
SG J:CYS83 2.3 5.4 1.0
SG J:CYS42 2.3 3.9 1.0
CE1 J:HIS80 2.7 5.9 1.0
CB J:CYS83 3.1 5.4 1.0
CB J:CYS42 3.1 3.9 1.0
CB J:CYS45 3.2 4.8 1.0
CG J:HIS80 3.2 5.9 1.0
N J:CYS45 3.8 4.8 1.0
CB J:HIS80 3.8 5.9 1.0
NE2 J:HIS80 3.8 5.9 1.0
CB J:CYS53 4.1 11.2 1.0
CA J:CYS45 4.1 4.8 1.0
CD2 J:HIS80 4.1 5.9 1.0
N J:HIS80 4.2 5.9 1.0
CA J:CYS53 4.3 11.2 1.0
CA J:CYS83 4.5 5.4 1.0
CA J:CYS42 4.5 3.9 1.0
CA J:HIS80 4.7 5.9 1.0
O J:CYS42 4.8 3.9 1.0
CB J:ILE44 4.8 3.5 1.0
C J:CYS45 4.9 4.8 1.0
C J:CYS42 4.9 3.9 1.0
N J:ILE54 4.9 13.0 1.0
C J:ILE44 5.0 3.5 1.0

Zinc binding site 3 out of 6 in 8wqe

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Zinc binding site 3 out of 6 in the Cryo-Em Structure of CUL2-RBX1-Elob-Eloc-FEM1B Bound with the C-Degron of CUX1 (Conformation 1)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Cryo-Em Structure of CUL2-RBX1-Elob-Eloc-FEM1B Bound with the C-Degron of CUX1 (Conformation 1) within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Zn202

b:23.1
occ:1.00
 OD1 J:ASP97 2.2 10.3 1.0
SG J:CYS94 2.3 8.9 1.0
SG J:CYS75 2.3 10.8 1.0
ND1 J:HIS77 2.3 8.1 1.0
CE1 J:HIS77 3.2 8.1 1.0
CG J:ASP97 3.2 10.3 1.0
CG J:HIS77 3.3 8.1 1.0
CB J:CYS94 3.5 8.9 1.0
CB J:HIS77 3.6 8.1 1.0
OD2 J:ASP97 3.6 10.3 1.0
CB J:CYS75 3.7 10.8 1.0
N J:ASP97 4.1 10.3 1.0
O J:ASP97 4.2 10.3 1.0
CB J:LEU96 4.3 8.4 1.0
NE2 J:HIS77 4.4 8.1 1.0
CD2 J:HIS77 4.4 8.1 1.0
CB J:ASP97 4.5 10.3 1.0
N J:LEU96 4.6 8.4 1.0
CA J:CYS94 4.7 8.9 1.0
CA J:ASP97 4.8 10.3 1.0
CZ J:PHE79 4.8 4.8 1.0
O J:CYS75 4.8 10.8 1.0
C J:CYS94 4.9 8.9 1.0
CA J:LEU96 4.9 8.4 1.0
CA J:CYS75 4.9 10.8 1.0
CE2 J:PHE79 5.0 4.8 1.0
C J:ASP97 5.0 10.3 1.0
CA J:HIS77 5.0 8.1 1.0
C J:LEU96 5.0 8.4 1.0

Zinc binding site 4 out of 6 in 8wqe

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Zinc binding site 4 out of 6 in the Cryo-Em Structure of CUL2-RBX1-Elob-Eloc-FEM1B Bound with the C-Degron of CUX1 (Conformation 1)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Cryo-Em Structure of CUL2-RBX1-Elob-Eloc-FEM1B Bound with the C-Degron of CUX1 (Conformation 1) within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Zn200

b:20.3
occ:1.00
 ND1 I:HIS82 2.1 5.9 1.0
SG I:CYS68 2.3 10.8 1.0
SG I:CYS53 2.3 6.1 1.0
SG I:CYS56 2.3 9.9 1.0
CE1 I:HIS82 2.8 5.9 1.0
CB I:CYS56 2.8 9.9 1.0
CG I:HIS82 3.1 5.9 1.0
CB I:HIS82 3.6 5.9 1.0
NE2 I:HIS82 3.8 5.9 1.0
CB I:CYS53 3.9 6.1 1.0
CB I:CYS68 3.9 10.8 1.0
CA I:CYS56 4.0 9.9 1.0
N I:CYS56 4.0 9.9 1.0
CD2 I:HIS82 4.0 5.9 1.0
N I:CYS53 4.3 6.1 1.0
CA I:CYS68 4.4 10.8 1.0
CA I:CYS53 4.6 6.1 1.0
O I:CYS53 4.8 6.1 1.0
N I:CYS68 4.9 10.8 1.0

Zinc binding site 5 out of 6 in 8wqe

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Zinc binding site 5 out of 6 in the Cryo-Em Structure of CUL2-RBX1-Elob-Eloc-FEM1B Bound with the C-Degron of CUX1 (Conformation 1)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Cryo-Em Structure of CUL2-RBX1-Elob-Eloc-FEM1B Bound with the C-Degron of CUX1 (Conformation 1) within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Zn201

b:2.4
occ:1.00
 ND1 I:HIS80 2.1 2.9 1.0
SG I:CYS45 2.3 2.9 1.0
SG I:CYS83 2.3 3.4 1.0
SG I:CYS42 2.3 2.3 1.0
CE1 I:HIS80 2.9 2.9 1.0
CB I:CYS42 2.9 2.3 1.0
CB I:CYS45 3.1 2.9 1.0
CG I:HIS80 3.2 2.9 1.0
CB I:CYS83 3.2 3.4 1.0
CB I:HIS80 3.6 2.9 1.0
N I:CYS45 3.8 2.9 1.0
N I:HIS80 4.0 2.9 1.0
CB I:CYS53 4.1 6.1 1.0
CA I:CYS45 4.1 2.9 1.0
NE2 I:HIS80 4.1 2.9 1.0
CD2 I:HIS80 4.2 2.9 1.0
CA I:CYS42 4.4 2.3 1.0
CA I:HIS80 4.5 2.9 1.0
CA I:CYS53 4.5 6.1 1.0
CA I:CYS83 4.6 3.4 1.0
C I:CYS42 4.9 2.3 1.0
C I:CYS45 4.9 2.9 1.0
O I:ASN47 4.9 3.3 1.0
CB I:ILE44 4.9 2.1 1.0
O I:CYS42 5.0 2.3 1.0

Zinc binding site 6 out of 6 in 8wqe

Go back to Zinc Binding Sites List in 8wqe
Zinc binding site 6 out of 6 in the Cryo-Em Structure of CUL2-RBX1-Elob-Eloc-FEM1B Bound with the C-Degron of CUX1 (Conformation 1)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Cryo-Em Structure of CUL2-RBX1-Elob-Eloc-FEM1B Bound with the C-Degron of CUX1 (Conformation 1) within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Zn202

b:43.6
occ:1.00
 SG I:CYS94 2.3 5.8 1.0
SG I:CYS75 2.3 5.9 1.0
ND1 I:HIS77 2.3 4.3 1.0
CB I:CYS75 2.8 5.9 1.0
CE1 I:HIS77 2.8 4.3 1.0
CB I:CYS94 3.2 5.8 1.0
CG I:HIS77 3.6 4.3 1.0
CB I:ASP97 3.9 9.2 1.0
O I:ASP97 4.0 9.2 1.0
NE2 I:HIS77 4.1 4.3 1.0
N I:ASP97 4.1 9.2 1.0
CB I:HIS77 4.2 4.3 1.0
CA I:CYS75 4.2 5.9 1.0
O I:CYS75 4.4 5.9 1.0
CA I:ASP97 4.4 9.2 1.0
CD2 I:HIS77 4.4 4.3 1.0
CA I:CYS94 4.6 5.8 1.0
C I:CYS75 4.6 5.9 1.0
C I:ASP97 4.7 9.2 1.0
C I:CYS94 5.0 5.8 1.0
NH2 I:ARG99 5.0 8.9 1.0
CB I:LEU96 5.0 6.0 1.0

Reference:

X.Chen, K.Zhang, C.Xu. Cryo-Em Structure of CUL2-RBX1-Elob-Eloc-FEM1B Bound with the C-Degron of CUX1 (Conformation 1) To Be Published.
Page generated: Thu Oct 31 13:38:42 2024

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