Zinc in PDB 8woz: Cryo-Em Structure of Sars-Cov Rbd in Complex with Rabbit ACE2

The binding sites of Zinc atom in the Cryo-Em Structure of Sars-Cov Rbd in Complex with Rabbit ACE2 (pdb code 8woz). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Cryo-Em Structure of Sars-Cov Rbd in Complex with Rabbit ACE2, PDB code: 8woz:

Zinc binding site 1 out of 1 in the Cryo-Em Structure of Sars-Cov Rbd in Complex with Rabbit ACE2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Sars-Cov Rbd in Complex with Rabbit ACE2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn701 b:74.2 occ:1.00 NE2 A:HIS378 2.0 53.5 1.0 NE2 A:HIS374 2.3 59.2 1.0 OE1 A:GLU402 2.6 54.2 1.0 CD2 A:HIS378 2.9 53.5 1.0 CE1 A:HIS378 3.0 53.5 1.0 CD2 A:HIS374 3.2 59.2 1.0 CE1 A:HIS374 3.3 59.2 1.0 CD A:GLU402 3.6 54.2 1.0 OE2 A:GLU402 3.9 54.2 1.0 ND1 A:HIS378 4.0 53.5 1.0 CG A:HIS378 4.1 53.5 1.0 OE2 A:GLU375 4.2 60.0 1.0 ND1 A:HIS374 4.4 59.2 1.0 CG A:HIS374 4.4 59.2 1.0 CD A:GLU375 4.8 60.0 1.0 OE1 A:GLU375 4.8 60.0 1.0 CG A:GLU402 5.0 54.2 1.0

K.Y.Shi, L.J.Li, G.H.Yu, G.F.Gao. Structural Basis of Increased Binding Affinities of Spikes From Sars-Cov-2 Omicron Variants to Rabbit-Hare ACE2S Reveals the Expanding Host Tendency To Be Published.