Zinc in PDB 8wos: Cryo-Em Structure of Human SIDT1 Protein with C1 Symmetry at Low pH

The binding sites of Zinc atom in the Cryo-Em Structure of Human SIDT1 Protein with C1 Symmetry at Low pH (pdb code 8wos). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cryo-Em Structure of Human SIDT1 Protein with C1 Symmetry at Low pH, PDB code: 8wos:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Cryo-Em Structure of Human SIDT1 Protein with C1 Symmetry at Low pH


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Human SIDT1 Protein with C1 Symmetry at Low pH within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn907 b:130.7 occ:1.00 CE1 A:HIS800 1.8 94.0 1.0 NE2 A:HIS563 2.3 75.0 1.0 NE2 A:HIS796 2.3 88.9 1.0 NE2 A:HIS800 2.3 91.4 1.0 CD2 A:HIS796 2.5 85.7 1.0 ND1 A:HIS800 2.9 88.9 1.0 CD2 A:HIS563 3.1 79.0 1.0 CE1 A:HIS563 3.4 78.3 1.0 CD2 A:HIS800 3.5 87.5 1.0 CE1 A:HIS796 3.6 86.8 1.0 CG A:HIS796 3.8 82.8 1.0 OG A:SER559 3.8 85.4 1.0 CG A:HIS800 3.8 86.5 1.0 CD1 A:TRP799 4.0 70.1 1.0 NE1 A:TRP799 4.1 74.3 1.0 ND1 A:HIS796 4.3 82.5 1.0 CG A:HIS563 4.3 75.8 1.0 ND1 A:HIS563 4.4 76.8 1.0 O A:HIS796 4.8 97.3 1.0 CB A:HIS796 4.9 80.8 1.0

Zinc binding site 2 out of 2 in the Cryo-Em Structure of Human SIDT1 Protein with C1 Symmetry at Low pH


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of Human SIDT1 Protein with C1 Symmetry at Low pH within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn907 b:114.1 occ:1.00 NE2 B:HIS563 2.3 79.4 1.0 NE2 B:HIS796 2.3 92.0 1.0 NE2 B:HIS800 2.3 83.9 1.0 CD2 B:HIS796 2.5 88.2 1.0 OD1 B:ASP574 2.8 105.5 1.0 CE1 B:HIS800 3.1 77.3 1.0 OD2 B:ASP574 3.2 113.4 1.0 CE1 B:HIS563 3.2 82.5 1.0 CD2 B:HIS563 3.3 82.5 1.0 CG B:ASP574 3.4 110.9 1.0 CD2 B:HIS800 3.4 79.5 1.0 CE1 B:HIS796 3.6 89.0 1.0 CG B:HIS796 3.9 83.5 1.0 ND1 B:HIS800 4.2 78.5 1.0 NE1 B:TRP799 4.3 68.3 1.0 CD1 B:TRP799 4.3 66.8 1.0 ND1 B:HIS796 4.3 81.2 1.0 ND1 B:HIS563 4.3 81.1 1.0 CG B:HIS563 4.4 79.5 1.0 CG B:HIS800 4.4 77.3 1.0 CB B:ASP574 4.9 106.8 1.0 CE2 B:TYR562 5.0 88.7 1.0

W.Liu, M.Tang, J.Wang, F.Wang, G.Song, X.Zhang, S.Wu, H.Ru. Structural Insights Into Cholesterol Transport and Hydrolase Activity of A Putative Human Rna Transport Protein SIDT1. Cell Discov V. 10 21 2024.
ISSN: ESSN 2056-5968
PubMed: 38378654
DOI: 10.1038/S41421-024-00647-2