Zinc in PDB 8wgw: Local Refinement of Rbd-ACE2

The binding sites of Zinc atom in the Local Refinement of Rbd-ACE2 (pdb code 8wgw). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Local Refinement of Rbd-ACE2, PDB code: 8wgw:

Zinc binding site 1 out of 1 in the Local Refinement of Rbd-ACE2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Local Refinement of Rbd-ACE2 within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn706 b:158.0 occ:1.00 OE2 B:GLU402 3.0 50.5 1.0 NE2 B:HIS374 3.5 46.5 1.0 CD B:GLU402 3.7 50.5 1.0 OE1 B:GLU402 4.0 50.5 1.0 OE2 B:GLU375 4.1 49.9 1.0 NE2 B:HIS378 4.1 41.6 1.0 CD2 B:HIS374 4.4 46.5 1.0 CE1 B:HIS374 4.5 46.5 1.0 CD2 B:HIS378 4.6 41.6 1.0 CG B:GLU402 4.9 50.5 1.0

Z.Hui, W.Xuepeng. The Receptor Binding Domain of Sars-Cov-2 Omicron Subvariants Targets Siglec-9 to Decrease Its Immunogenicity By Preventing Macrophage Phagocytosis Nat.Immunol. 2024.
ISSN: ESSN 1529-2916
DOI: 10.1038/S41590-024-01776-2