Zinc in PDB 8wex: Crystal Structure of N-Acetyl Sugar Amidotransferase From Legionella Pneumophila

The structure of Crystal Structure of N-Acetyl Sugar Amidotransferase From Legionella Pneumophila, PDB code: 8wex was solved by J.Gao, W.Xu, H.Ge, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.33
Space group	P 32 1 2
Cell size a, b, c (Å), α, β, γ (°)	74.722, 74.722, 319.678, 90, 90, 120
R / Rfree (%)	20.8 / 24.7

The binding sites of Zinc atom in the Crystal Structure of N-Acetyl Sugar Amidotransferase From Legionella Pneumophila (pdb code 8wex). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of N-Acetyl Sugar Amidotransferase From Legionella Pneumophila, PDB code: 8wex:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of N-Acetyl Sugar Amidotransferase From Legionella Pneumophila


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of N-Acetyl Sugar Amidotransferase From Legionella Pneumophila within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn501 b:53.5 occ:1.00 SG A:CYS79 2.0 57.2 1.0 SG A:CYS47 2.2 49.2 1.0 SG A:CYS82 2.4 66.0 1.0 SG A:CYS44 2.5 57.7 1.0 CB A:CYS47 3.3 49.6 1.0 CB A:CYS79 3.3 62.7 1.0 CB A:CYS82 3.3 61.6 1.0 NH2 A:ARG362 3.5 62.3 1.0 N A:CYS47 3.5 54.6 1.0 CB A:CYS44 3.5 61.8 1.0 N A:CYS79 3.9 60.9 1.0 CA A:CYS47 3.9 51.5 1.0 N A:CYS82 4.1 57.8 1.0 CA A:CYS79 4.1 64.1 1.0 NE A:ARG362 4.2 64.3 1.0 CA A:CYS82 4.3 62.6 1.0 CZ A:ARG362 4.3 64.7 1.0 CB A:SER46 4.4 60.3 1.0 O A:CYS79 4.5 58.0 1.0 CG2 A:ILE49 4.6 53.8 1.0 C A:SER46 4.6 56.8 1.0 C A:CYS79 4.7 61.0 1.0 C A:CYS47 4.7 50.1 1.0 CG2 A:ILE78 4.9 59.8 1.0 CA A:SER46 4.9 59.3 1.0 N A:SER46 4.9 60.6 1.0 CA A:CYS44 4.9 58.9 1.0 C A:ILE78 5.0 62.7 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of N-Acetyl Sugar Amidotransferase From Legionella Pneumophila


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of N-Acetyl Sugar Amidotransferase From Legionella Pneumophila within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn501 b:60.5 occ:1.00 SG B:CYS79 2.0 55.9 1.0 SG B:CYS47 2.2 50.7 1.0 SG B:CYS82 2.3 62.6 1.0 SG B:CYS44 2.5 57.4 1.0 CB B:CYS47 3.3 51.7 1.0 CB B:CYS82 3.3 59.1 1.0 CB B:CYS79 3.4 62.6 1.0 N B:CYS47 3.5 58.3 1.0 CB B:CYS44 3.6 65.5 1.0 NH2 B:ARG362 3.9 58.8 1.0 CA B:CYS47 4.0 54.6 1.0 N B:CYS82 4.0 65.6 1.0 N B:CYS79 4.0 69.2 1.0 CA B:CYS82 4.2 66.0 1.0 CA B:CYS79 4.3 67.8 1.0 NE B:ARG362 4.3 59.4 1.0 CB B:SER46 4.4 66.2 1.0 CG2 B:ILE49 4.5 52.9 1.0 O B:CYS79 4.5 57.4 1.0 OG B:SER46 4.6 69.2 1.0 C B:SER46 4.6 59.8 1.0 CZ B:ARG362 4.6 59.6 1.0 C B:CYS47 4.8 53.2 1.0 C B:CYS79 4.8 64.8 1.0 CG2 B:ILE78 4.8 73.9 1.0 CA B:SER46 4.9 63.5 1.0 N B:SER46 4.9 61.6 1.0

J.Gao, W.Xu, T.Liu, W.Sun, N.Wang, J.Ma, H.Ge. Structural Characterization of An N-Acetyl Sugar Amidotransferase Involved in the Lipopolysaccharide Biosynthesis in Bacteria. Int J Mol Sci V. 24 2023.
ISSN: ESSN 1422-0067
PubMed: 37895170
DOI: 10.3390/IJMS242015491