Zinc in PDB 8svm: Plasmodium Falciparum M17 Aminopeptidase Bound to MMV1557817
Enzymatic activity of Plasmodium Falciparum M17 Aminopeptidase Bound to MMV1557817
All present enzymatic activity of Plasmodium Falciparum M17 Aminopeptidase Bound to MMV1557817:
3.4.11.1;
Protein crystallography data
The structure of Plasmodium Falciparum M17 Aminopeptidase Bound to MMV1557817, PDB code: 8svm
was solved by
S.Mcgowan,
N.Drinkwater,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
49.00 /
2.30
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
174.204,
177.926,
229.762,
90,
90,
90
|
|
R / Rfree (%)
|
20.4 /
25.2
|
Other elements in 8svm:
The structure of Plasmodium Falciparum M17 Aminopeptidase Bound to MMV1557817 also contains other interesting chemical elements:
Zinc Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
24;
Binding sites:
The binding sites of Zinc atom in the Plasmodium Falciparum M17 Aminopeptidase Bound to MMV1557817
(pdb code 8svm). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 24 binding sites of Zinc where determined in the
Plasmodium Falciparum M17 Aminopeptidase Bound to MMV1557817, PDB code: 8svm:
Jump to Zinc binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Zinc binding site 1 out
of 24 in 8svm
Go back to
Zinc Binding Sites List in 8svm
Zinc binding site 1 out
of 24 in the Plasmodium Falciparum M17 Aminopeptidase Bound to MMV1557817
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Plasmodium Falciparum M17 Aminopeptidase Bound to MMV1557817 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn702
b:37.6
occ:0.90
|
O
|
A:ASP459
|
2.1
|
22.7
|
1.0
|
|
OAF
|
A:WRC704
|
2.2
|
35.2
|
1.0
|
|
OD2
|
A:ASP379
|
2.2
|
18.5
|
1.0
|
|
OD1
|
A:ASP459
|
2.3
|
15.9
|
1.0
|
|
O
|
A:WRC704
|
2.3
|
17.0
|
1.0
|
|
OE1
|
A:GLU461
|
2.4
|
21.6
|
1.0
|
|
C
|
A:WRC704
|
3.0
|
21.0
|
1.0
|
|
CG
|
A:ASP379
|
3.0
|
17.3
|
1.0
|
|
NAQ
|
A:WRC704
|
3.0
|
23.2
|
1.0
|
|
C
|
A:ASP459
|
3.1
|
15.8
|
1.0
|
|
OD1
|
A:ASP379
|
3.1
|
24.3
|
1.0
|
|
CG
|
A:ASP459
|
3.2
|
16.3
|
1.0
|
|
CD
|
A:GLU461
|
3.3
|
21.7
|
1.0
|
|
OE2
|
A:GLU461
|
3.5
|
22.3
|
1.0
|
|
ZN
|
A:ZN703
|
3.5
|
57.9
|
0.8
|
|
CA
|
A:ASP459
|
3.6
|
14.7
|
1.0
|
|
CB
|
A:ASP459
|
4.0
|
15.1
|
1.0
|
|
OD2
|
A:ASP459
|
4.0
|
23.4
|
1.0
|
|
NZ
|
A:LYS386
|
4.1
|
17.0
|
1.0
|
|
CE
|
A:LYS386
|
4.2
|
17.6
|
1.0
|
|
N
|
A:ALA460
|
4.2
|
14.1
|
1.0
|
|
N
|
A:GLU461
|
4.4
|
15.7
|
1.0
|
|
CB
|
A:ASP379
|
4.4
|
9.8
|
1.0
|
|
CA
|
A:WRC704
|
4.5
|
23.8
|
1.0
|
|
OD2
|
A:ASP399
|
4.6
|
32.0
|
1.0
|
|
CA
|
A:ALA460
|
4.6
|
17.3
|
1.0
|
|
CG
|
A:GLU461
|
4.7
|
20.1
|
1.0
|
|
ND2
|
A:ASN432
|
4.7
|
12.3
|
1.0
|
|
O1
|
A:CO3701
|
4.8
|
33.6
|
1.0
|
|
O
|
A:HOH803
|
4.8
|
40.3
|
1.0
|
|
N
|
A:WRC704
|
4.9
|
20.9
|
1.0
|
|
CA
|
A:GLY381
|
4.9
|
15.3
|
1.0
|
|
N
|
A:ASP459
|
5.0
|
15.0
|
1.0
|
|
Zinc binding site 2 out
of 24 in 8svm
Go back to
Zinc Binding Sites List in 8svm
Zinc binding site 2 out
of 24 in the Plasmodium Falciparum M17 Aminopeptidase Bound to MMV1557817
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Plasmodium Falciparum M17 Aminopeptidase Bound to MMV1557817 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn703
b:57.9
occ:0.80
|
NZ
|
A:LYS374
|
2.1
|
20.6
|
1.0
|
|
OAF
|
A:WRC704
|
2.1
|
35.2
|
1.0
|
|
OE2
|
A:GLU461
|
2.1
|
22.3
|
1.0
|
|
OD2
|
A:ASP399
|
2.2
|
32.0
|
1.0
|
|
CE
|
A:LYS374
|
2.8
|
18.2
|
1.0
|
|
CG
|
A:ASP399
|
3.0
|
23.6
|
1.0
|
|
CD
|
A:GLU461
|
3.2
|
21.7
|
1.0
|
|
OD1
|
A:ASP399
|
3.2
|
25.1
|
1.0
|
|
OD2
|
A:ASP379
|
3.3
|
18.5
|
1.0
|
|
NAQ
|
A:WRC704
|
3.3
|
23.2
|
1.0
|
|
ZN
|
A:ZN702
|
3.5
|
37.6
|
0.9
|
|
OE1
|
A:GLU461
|
3.6
|
21.6
|
1.0
|
|
CG
|
A:ASP379
|
3.8
|
17.3
|
1.0
|
|
O1
|
A:CO3701
|
4.1
|
33.6
|
1.0
|
|
CG1
|
A:ILE376
|
4.2
|
16.5
|
1.0
|
|
CD
|
A:LYS374
|
4.2
|
20.4
|
1.0
|
|
O
|
A:THR486
|
4.2
|
19.2
|
1.0
|
|
C
|
A:WRC704
|
4.3
|
21.0
|
1.0
|
|
CB
|
A:ASP399
|
4.3
|
17.4
|
1.0
|
|
CB
|
A:ASP379
|
4.3
|
9.8
|
1.0
|
|
CG
|
A:GLU461
|
4.4
|
20.1
|
1.0
|
|
N
|
A:GLY462
|
4.5
|
16.4
|
1.0
|
|
CB
|
A:ILE376
|
4.5
|
14.8
|
1.0
|
|
OD1
|
A:ASP379
|
4.5
|
24.3
|
1.0
|
|
O
|
A:WRC704
|
4.5
|
17.0
|
1.0
|
|
CA
|
A:GLY462
|
4.6
|
13.5
|
1.0
|
|
CG2
|
A:ILE376
|
4.7
|
18.2
|
1.0
|
|
O
|
A:LEU487
|
4.9
|
32.9
|
1.0
|
|
O
|
A:ASP459
|
5.0
|
22.7
|
1.0
|
|
Zinc binding site 3 out
of 24 in 8svm
Go back to
Zinc Binding Sites List in 8svm
Zinc binding site 3 out
of 24 in the Plasmodium Falciparum M17 Aminopeptidase Bound to MMV1557817
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of Plasmodium Falciparum M17 Aminopeptidase Bound to MMV1557817 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn702
b:39.5
occ:0.90
|
O
|
B:ASP459
|
2.0
|
24.8
|
1.0
|
|
OAF
|
B:WRC704
|
2.1
|
27.4
|
1.0
|
|
OD2
|
B:ASP379
|
2.1
|
17.5
|
1.0
|
|
O
|
B:WRC704
|
2.1
|
26.0
|
1.0
|
|
OD1
|
B:ASP459
|
2.2
|
11.7
|
1.0
|
|
OE1
|
B:GLU461
|
2.3
|
26.3
|
1.0
|
|
C
|
B:WRC704
|
2.8
|
25.7
|
1.0
|
|
NAQ
|
B:WRC704
|
2.8
|
27.4
|
1.0
|
|
CG
|
B:ASP379
|
3.0
|
10.9
|
1.0
|
|
C
|
B:ASP459
|
3.0
|
17.7
|
1.0
|
|
CG
|
B:ASP459
|
3.1
|
14.6
|
1.0
|
|
CD
|
B:GLU461
|
3.2
|
19.3
|
1.0
|
|
OD1
|
B:ASP379
|
3.3
|
14.1
|
1.0
|
|
ZN
|
B:ZN703
|
3.4
|
82.2
|
0.8
|
|
OE2
|
B:GLU461
|
3.4
|
17.9
|
1.0
|
|
CA
|
B:ASP459
|
3.6
|
13.2
|
1.0
|
|
O
|
B:HOH881
|
3.6
|
18.4
|
1.0
|
|
NZ
|
B:LYS386
|
3.8
|
19.5
|
1.0
|
|
CB
|
B:ASP459
|
3.9
|
11.6
|
1.0
|
|
OD2
|
B:ASP459
|
3.9
|
20.9
|
1.0
|
|
N
|
B:ALA460
|
4.2
|
13.6
|
1.0
|
|
CE
|
B:LYS386
|
4.2
|
18.7
|
1.0
|
|
CA
|
B:WRC704
|
4.3
|
22.1
|
1.0
|
|
N
|
B:GLU461
|
4.3
|
16.5
|
1.0
|
|
CB
|
B:ASP379
|
4.4
|
10.4
|
1.0
|
|
CA
|
B:ALA460
|
4.6
|
16.1
|
1.0
|
|
CG
|
B:GLU461
|
4.6
|
11.9
|
1.0
|
|
N
|
B:WRC704
|
4.7
|
22.3
|
1.0
|
|
OD2
|
B:ASP399
|
4.7
|
33.1
|
1.0
|
|
O2
|
B:CO3701
|
4.7
|
24.8
|
1.0
|
|
ND2
|
B:ASN432
|
4.8
|
21.1
|
1.0
|
|
N
|
B:ASP459
|
5.0
|
13.6
|
1.0
|
|
C
|
B:ALA460
|
5.0
|
19.9
|
1.0
|
|
Zinc binding site 4 out
of 24 in 8svm
Go back to
Zinc Binding Sites List in 8svm
Zinc binding site 4 out
of 24 in the Plasmodium Falciparum M17 Aminopeptidase Bound to MMV1557817
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of Plasmodium Falciparum M17 Aminopeptidase Bound to MMV1557817 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn703
b:82.2
occ:0.80
|
OAF
|
B:WRC704
|
1.9
|
27.4
|
1.0
|
|
OD2
|
B:ASP399
|
2.0
|
33.1
|
1.0
|
|
OE2
|
B:GLU461
|
2.0
|
17.9
|
1.0
|
|
NZ
|
B:LYS374
|
2.1
|
15.8
|
1.0
|
|
CG
|
B:ASP399
|
2.8
|
27.9
|
1.0
|
|
CE
|
B:LYS374
|
2.9
|
7.3
|
1.0
|
|
OD1
|
B:ASP399
|
2.9
|
24.2
|
1.0
|
|
OD2
|
B:ASP379
|
3.0
|
17.5
|
1.0
|
|
O
|
B:HOH881
|
3.0
|
18.4
|
1.0
|
|
NAQ
|
B:WRC704
|
3.1
|
27.4
|
1.0
|
|
CD
|
B:GLU461
|
3.1
|
19.3
|
1.0
|
|
ZN
|
B:ZN702
|
3.4
|
39.5
|
0.9
|
|
OE1
|
B:GLU461
|
3.5
|
26.3
|
1.0
|
|
CG
|
B:ASP379
|
3.7
|
10.9
|
1.0
|
|
C
|
B:WRC704
|
4.1
|
25.7
|
1.0
|
|
CB
|
B:ASP379
|
4.1
|
10.4
|
1.0
|
|
O
|
B:THR486
|
4.1
|
18.5
|
1.0
|
|
CB
|
B:ASP399
|
4.2
|
24.6
|
1.0
|
|
O2
|
B:CO3701
|
4.2
|
24.8
|
1.0
|
|
CD
|
B:LYS374
|
4.3
|
8.3
|
1.0
|
|
O
|
B:WRC704
|
4.4
|
26.0
|
1.0
|
|
CG
|
B:GLU461
|
4.4
|
11.9
|
1.0
|
|
CG1
|
B:ILE376
|
4.4
|
26.5
|
1.0
|
|
N
|
B:GLY462
|
4.5
|
15.1
|
1.0
|
|
OD1
|
B:ASP379
|
4.5
|
14.1
|
1.0
|
|
CB
|
B:ILE376
|
4.7
|
21.3
|
1.0
|
|
CA
|
B:GLY462
|
4.7
|
15.3
|
1.0
|
|
CG2
|
B:ILE376
|
4.9
|
22.6
|
1.0
|
|
O
|
B:ASP459
|
4.9
|
24.8
|
1.0
|
|
Zinc binding site 5 out
of 24 in 8svm
Go back to
Zinc Binding Sites List in 8svm
Zinc binding site 5 out
of 24 in the Plasmodium Falciparum M17 Aminopeptidase Bound to MMV1557817
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 5 of Plasmodium Falciparum M17 Aminopeptidase Bound to MMV1557817 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Zn702
b:44.6
occ:0.60
|
OAF
|
C:WRC704
|
1.9
|
31.8
|
1.0
|
|
OD2
|
C:ASP399
|
2.1
|
31.8
|
1.0
|
|
OE2
|
C:GLU461
|
2.3
|
20.3
|
1.0
|
|
NZ
|
C:LYS374
|
2.3
|
18.4
|
1.0
|
|
CE
|
C:LYS374
|
2.9
|
15.9
|
1.0
|
|
OD2
|
C:ASP379
|
2.9
|
18.4
|
1.0
|
|
CG
|
C:ASP399
|
3.1
|
27.9
|
1.0
|
|
CD
|
C:GLU461
|
3.1
|
18.6
|
1.0
|
|
NAQ
|
C:WRC704
|
3.1
|
23.0
|
1.0
|
|
ZN
|
C:ZN703
|
3.2
|
35.8
|
0.7
|
|
OE1
|
C:GLU461
|
3.3
|
19.9
|
1.0
|
|
OD1
|
C:ASP399
|
3.5
|
34.5
|
1.0
|
|
CG
|
C:ASP379
|
3.6
|
15.9
|
1.0
|
|
C
|
C:WRC704
|
3.9
|
19.9
|
1.0
|
|
O
|
C:WRC704
|
4.0
|
14.1
|
1.0
|
|
O1
|
C:CO3701
|
4.0
|
34.7
|
1.0
|
|
CB
|
C:ASP379
|
4.1
|
14.2
|
1.0
|
|
CG1
|
C:ILE376
|
4.3
|
18.4
|
1.0
|
|
N
|
C:GLY462
|
4.3
|
20.5
|
1.0
|
|
OD1
|
C:ASP379
|
4.4
|
19.2
|
1.0
|
|
CD
|
C:LYS374
|
4.4
|
18.5
|
1.0
|
|
CB
|
C:ASP399
|
4.4
|
20.2
|
1.0
|
|
CG
|
C:GLU461
|
4.5
|
20.1
|
1.0
|
|
O
|
C:THR486
|
4.5
|
18.6
|
1.0
|
|
CA
|
C:GLY462
|
4.5
|
18.7
|
1.0
|
|
O
|
C:ASP459
|
4.6
|
14.8
|
1.0
|
|
CB
|
C:ILE376
|
4.6
|
17.8
|
1.0
|
|
CG2
|
C:ILE376
|
4.8
|
19.4
|
1.0
|
|
Zinc binding site 6 out
of 24 in 8svm
Go back to
Zinc Binding Sites List in 8svm
Zinc binding site 6 out
of 24 in the Plasmodium Falciparum M17 Aminopeptidase Bound to MMV1557817
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 6 of Plasmodium Falciparum M17 Aminopeptidase Bound to MMV1557817 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Zn703
b:35.8
occ:0.70
|
OD2
|
C:ASP379
|
2.0
|
18.4
|
1.0
|
|
O
|
C:ASP459
|
2.1
|
14.8
|
1.0
|
|
OD1
|
C:ASP459
|
2.2
|
22.9
|
1.0
|
|
OE1
|
C:GLU461
|
2.3
|
19.9
|
1.0
|
|
O
|
C:WRC704
|
2.4
|
14.1
|
1.0
|
|
OAF
|
C:WRC704
|
2.5
|
31.8
|
1.0
|
|
CG
|
C:ASP379
|
2.8
|
15.9
|
1.0
|
|
OD1
|
C:ASP379
|
3.0
|
19.2
|
1.0
|
|
C
|
C:ASP459
|
3.0
|
14.7
|
1.0
|
|
C
|
C:WRC704
|
3.1
|
19.9
|
1.0
|
|
CG
|
C:ASP459
|
3.2
|
19.6
|
1.0
|
|
ZN
|
C:ZN702
|
3.2
|
44.6
|
0.6
|
|
CD
|
C:GLU461
|
3.3
|
18.6
|
1.0
|
|
NAQ
|
C:WRC704
|
3.3
|
23.0
|
1.0
|
|
CA
|
C:ASP459
|
3.4
|
17.7
|
1.0
|
|
OE2
|
C:GLU461
|
3.5
|
20.3
|
1.0
|
|
CB
|
C:ASP459
|
3.9
|
18.1
|
1.0
|
|
NZ
|
C:LYS386
|
4.0
|
20.7
|
1.0
|
|
OD2
|
C:ASP459
|
4.1
|
18.9
|
1.0
|
|
CE
|
C:LYS386
|
4.1
|
14.2
|
1.0
|
|
N
|
C:ALA460
|
4.2
|
11.7
|
1.0
|
|
CB
|
C:ASP379
|
4.3
|
14.2
|
1.0
|
|
ND2
|
C:ASN432
|
4.3
|
18.4
|
1.0
|
|
N
|
C:GLU461
|
4.3
|
14.4
|
1.0
|
|
OD2
|
C:ASP399
|
4.5
|
31.8
|
1.0
|
|
CA
|
C:WRC704
|
4.6
|
19.8
|
1.0
|
|
CG
|
C:GLU461
|
4.6
|
20.1
|
1.0
|
|
CA
|
C:ALA460
|
4.6
|
12.7
|
1.0
|
|
N
|
C:ASP459
|
4.8
|
18.1
|
1.0
|
|
CA
|
C:GLY381
|
4.8
|
19.8
|
1.0
|
|
O
|
C:THR458
|
4.8
|
17.1
|
1.0
|
|
O1
|
C:CO3701
|
4.9
|
34.7
|
1.0
|
|
N
|
C:WRC704
|
4.9
|
19.1
|
1.0
|
|
Zinc binding site 7 out
of 24 in 8svm
Go back to
Zinc Binding Sites List in 8svm
Zinc binding site 7 out
of 24 in the Plasmodium Falciparum M17 Aminopeptidase Bound to MMV1557817
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 7 of Plasmodium Falciparum M17 Aminopeptidase Bound to MMV1557817 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Zn702
b:48.2
occ:0.80
|
OAF
|
D:WRC704
|
2.0
|
28.7
|
1.0
|
|
OE2
|
D:GLU461
|
2.0
|
19.9
|
1.0
|
|
OD2
|
D:ASP399
|
2.0
|
29.8
|
1.0
|
|
NZ
|
D:LYS374
|
2.6
|
20.0
|
1.0
|
|
OD2
|
D:ASP379
|
2.9
|
19.2
|
1.0
|
|
CD
|
D:GLU461
|
3.1
|
22.8
|
1.0
|
|
ZN
|
D:ZN703
|
3.1
|
32.3
|
0.8
|
|
CE
|
D:LYS374
|
3.1
|
15.7
|
1.0
|
|
CG
|
D:ASP399
|
3.1
|
26.4
|
1.0
|
|
O
|
D:HOH805
|
3.1
|
41.8
|
1.0
|
|
NAQ
|
D:WRC704
|
3.3
|
27.6
|
1.0
|
|
CG
|
D:ASP379
|
3.5
|
19.0
|
1.0
|
|
OE1
|
D:GLU461
|
3.5
|
28.3
|
1.0
|
|
OD1
|
D:ASP399
|
3.8
|
32.4
|
1.0
|
|
O
|
D:HOH929
|
3.8
|
25.4
|
1.0
|
|
CB
|
D:ASP379
|
3.9
|
18.2
|
1.0
|
|
CG1
|
D:ILE376
|
4.1
|
16.2
|
1.0
|
|
CB
|
D:ASP399
|
4.2
|
18.9
|
1.0
|
|
C
|
D:WRC704
|
4.2
|
28.2
|
1.0
|
|
OD1
|
D:ASP379
|
4.3
|
18.1
|
1.0
|
|
O
|
D:WRC704
|
4.3
|
26.5
|
1.0
|
|
CG
|
D:GLU461
|
4.4
|
22.1
|
1.0
|
|
CB
|
D:ILE376
|
4.4
|
15.4
|
1.0
|
|
N
|
D:GLY462
|
4.4
|
18.1
|
1.0
|
|
CG2
|
D:ILE376
|
4.5
|
8.5
|
1.0
|
|
O
|
D:THR486
|
4.5
|
22.7
|
1.0
|
|
O2
|
D:CO3701
|
4.6
|
31.1
|
1.0
|
|
CD
|
D:LYS374
|
4.6
|
14.4
|
1.0
|
|
CA
|
D:GLY462
|
4.7
|
18.5
|
1.0
|
|
O
|
D:ASP459
|
4.7
|
24.6
|
1.0
|
|
Zinc binding site 8 out
of 24 in 8svm
Go back to
Zinc Binding Sites List in 8svm
Zinc binding site 8 out
of 24 in the Plasmodium Falciparum M17 Aminopeptidase Bound to MMV1557817
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 8 of Plasmodium Falciparum M17 Aminopeptidase Bound to MMV1557817 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Zn703
b:32.3
occ:0.80
|
O
|
D:ASP459
|
2.0
|
24.6
|
1.0
|
|
OD2
|
D:ASP379
|
2.2
|
19.2
|
1.0
|
|
OAF
|
D:WRC704
|
2.2
|
28.7
|
1.0
|
|
OE1
|
D:GLU461
|
2.3
|
28.3
|
1.0
|
|
OD1
|
D:ASP459
|
2.4
|
21.5
|
1.0
|
|
O
|
D:WRC704
|
2.4
|
26.5
|
1.0
|
|
CG
|
D:ASP379
|
2.9
|
19.0
|
1.0
|
|
C
|
D:ASP459
|
2.9
|
19.8
|
1.0
|
|
OD1
|
D:ASP379
|
3.0
|
18.1
|
1.0
|
|
NAQ
|
D:WRC704
|
3.1
|
27.6
|
1.0
|
|
C
|
D:WRC704
|
3.1
|
28.2
|
1.0
|
|
CD
|
D:GLU461
|
3.1
|
22.8
|
1.0
|
|
ZN
|
D:ZN702
|
3.1
|
48.2
|
0.8
|
|
OE2
|
D:GLU461
|
3.2
|
19.9
|
1.0
|
|
CG
|
D:ASP459
|
3.4
|
23.0
|
1.0
|
|
O
|
D:HOH805
|
3.4
|
41.8
|
1.0
|
|
CA
|
D:ASP459
|
3.5
|
17.0
|
1.0
|
|
CB
|
D:ASP459
|
4.0
|
17.7
|
1.0
|
|
N
|
D:ALA460
|
4.0
|
22.4
|
1.0
|
|
NZ
|
D:LYS386
|
4.1
|
19.7
|
1.0
|
|
O
|
D:HOH929
|
4.2
|
25.4
|
1.0
|
|
N
|
D:GLU461
|
4.2
|
21.7
|
1.0
|
|
CB
|
D:ASP379
|
4.3
|
18.2
|
1.0
|
|
OD2
|
D:ASP459
|
4.3
|
28.4
|
1.0
|
|
CE
|
D:LYS386
|
4.4
|
16.5
|
1.0
|
|
OD2
|
D:ASP399
|
4.4
|
29.8
|
1.0
|
|
CA
|
D:ALA460
|
4.5
|
20.8
|
1.0
|
|
CG
|
D:GLU461
|
4.5
|
22.1
|
1.0
|
|
ND2
|
D:ASN432
|
4.6
|
15.7
|
1.0
|
|
CA
|
D:WRC704
|
4.6
|
28.1
|
1.0
|
|
O
|
D:THR458
|
4.8
|
17.6
|
1.0
|
|
N
|
D:ASP459
|
4.8
|
15.4
|
1.0
|
|
C
|
D:ALA460
|
4.9
|
19.7
|
1.0
|
|
CA
|
D:GLY381
|
4.9
|
9.0
|
1.0
|
|
N
|
D:WRC704
|
5.0
|
26.4
|
1.0
|
|
Zinc binding site 9 out
of 24 in 8svm
Go back to
Zinc Binding Sites List in 8svm
Zinc binding site 9 out
of 24 in the Plasmodium Falciparum M17 Aminopeptidase Bound to MMV1557817
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 9 of Plasmodium Falciparum M17 Aminopeptidase Bound to MMV1557817 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Zn702
b:70.3
occ:0.90
|
OAF
|
E:WRC704
|
2.0
|
29.7
|
1.0
|
|
OD2
|
E:ASP399
|
2.0
|
35.3
|
1.0
|
|
OE2
|
E:GLU461
|
2.1
|
26.4
|
1.0
|
|
NZ
|
E:LYS374
|
2.2
|
25.1
|
1.0
|
|
CE
|
E:LYS374
|
2.9
|
24.2
|
1.0
|
|
CG
|
E:ASP399
|
2.9
|
33.3
|
1.0
|
|
CD
|
E:GLU461
|
3.0
|
18.5
|
1.0
|
|
OD2
|
E:ASP379
|
3.1
|
24.3
|
1.0
|
|
NAQ
|
E:WRC704
|
3.2
|
25.4
|
1.0
|
|
OD1
|
E:ASP399
|
3.2
|
36.4
|
1.0
|
|
OE1
|
E:GLU461
|
3.4
|
14.2
|
1.0
|
|
ZN
|
E:ZN703
|
3.4
|
36.5
|
0.8
|
|
CG
|
E:ASP379
|
3.8
|
20.3
|
1.0
|
|
O3
|
E:CO3701
|
4.0
|
28.7
|
1.0
|
|
O
|
E:THR486
|
4.1
|
25.3
|
1.0
|
|
C
|
E:WRC704
|
4.2
|
24.0
|
1.0
|
|
CB
|
E:ASP379
|
4.3
|
19.8
|
1.0
|
|
CG
|
E:GLU461
|
4.3
|
15.6
|
1.0
|
|
CD
|
E:LYS374
|
4.3
|
21.2
|
1.0
|
|
CB
|
E:ASP399
|
4.3
|
26.6
|
1.0
|
|
O
|
E:WRC704
|
4.4
|
21.8
|
1.0
|
|
CG1
|
E:ILE376
|
4.4
|
13.8
|
1.0
|
|
N
|
E:GLY462
|
4.4
|
22.4
|
1.0
|
|
OD1
|
E:ASP379
|
4.6
|
21.2
|
1.0
|
|
O
|
E:ASP459
|
4.7
|
17.6
|
1.0
|
|
CA
|
E:GLY462
|
4.7
|
21.9
|
1.0
|
|
CB
|
E:ILE376
|
4.8
|
14.7
|
1.0
|
|
OG1
|
E:THR486
|
5.0
|
21.7
|
1.0
|
|
Zinc binding site 10 out
of 24 in 8svm
Go back to
Zinc Binding Sites List in 8svm
Zinc binding site 10 out
of 24 in the Plasmodium Falciparum M17 Aminopeptidase Bound to MMV1557817
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 10 of Plasmodium Falciparum M17 Aminopeptidase Bound to MMV1557817 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Zn703
b:36.5
occ:0.80
|
OD1
|
E:ASP459
|
2.1
|
25.2
|
1.0
|
|
OD2
|
E:ASP379
|
2.1
|
24.3
|
1.0
|
|
O
|
E:ASP459
|
2.1
|
17.6
|
1.0
|
|
O
|
E:WRC704
|
2.2
|
21.8
|
1.0
|
|
OAF
|
E:WRC704
|
2.3
|
29.7
|
1.0
|
|
OE1
|
E:GLU461
|
2.4
|
14.2
|
1.0
|
|
CG
|
E:ASP459
|
2.8
|
17.5
|
1.0
|
|
C
|
E:WRC704
|
3.0
|
24.0
|
1.0
|
|
C
|
E:ASP459
|
3.1
|
16.4
|
1.0
|
|
NAQ
|
E:WRC704
|
3.1
|
25.4
|
1.0
|
|
CG
|
E:ASP379
|
3.1
|
20.3
|
1.0
|
|
CD
|
E:GLU461
|
3.4
|
18.5
|
1.0
|
|
OD1
|
E:ASP379
|
3.4
|
21.2
|
1.0
|
|
ZN
|
E:ZN702
|
3.4
|
70.3
|
0.9
|
|
CA
|
E:ASP459
|
3.5
|
16.4
|
1.0
|
|
OD2
|
E:ASP459
|
3.5
|
19.2
|
1.0
|
|
OE2
|
E:GLU461
|
3.6
|
26.4
|
1.0
|
|
NZ
|
E:LYS386
|
3.7
|
17.7
|
1.0
|
|
CB
|
E:ASP459
|
3.7
|
15.8
|
1.0
|
|
CE
|
E:LYS386
|
4.0
|
18.2
|
1.0
|
|
N
|
E:ALA460
|
4.3
|
16.0
|
1.0
|
|
CB
|
E:ASP379
|
4.4
|
19.8
|
1.0
|
|
CA
|
E:WRC704
|
4.4
|
25.4
|
1.0
|
|
N
|
E:GLU461
|
4.5
|
14.6
|
1.0
|
|
OD2
|
E:ASP399
|
4.5
|
35.3
|
1.0
|
|
O3
|
E:CO3701
|
4.6
|
28.7
|
1.0
|
|
CG
|
E:GLU461
|
4.7
|
15.6
|
1.0
|
|
CA
|
E:ALA460
|
4.8
|
17.6
|
1.0
|
|
ND2
|
E:ASN432
|
4.8
|
9.5
|
1.0
|
|
N
|
E:WRC704
|
4.8
|
24.6
|
1.0
|
|
N
|
E:ASP459
|
4.9
|
15.9
|
1.0
|
|
CA
|
E:GLY381
|
4.9
|
19.4
|
1.0
|
|
Reference:
T.F.De Koning-Ward,
N.Drinkwater,
R.C.S.Edgar,
S.Mcgowan,
P.J.Scammells.
Characterisation of A Novel Antimalarial Agent Targeting Haemaglobin Digestion That Shows Cross-Species Reactivity and Excellent in Vivo Properties. Mbio 2024.
ISSN: ESSN 2150-7511
Page generated: Thu Oct 31 11:12:08 2024
|
