Zinc in PDB 8s9r: SAL2, Staphylococcus Aureus Lipase 2 (Geh, LIP2), Apo Form

All present enzymatic activity of SAL2, Staphylococcus Aureus Lipase 2 (Geh, LIP2), Apo Form:
3.1.1.3;

The structure of SAL2, Staphylococcus Aureus Lipase 2 (Geh, LIP2), Apo Form, PDB code: 8s9r was solved by M.Fellner, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.58 / 2.60
Space group	P 41 2 2
Cell size a, b, c (Å), α, β, γ (°)	129.146, 129.146, 251.791, 90, 90, 90
R / Rfree (%)	19.9 / 22.4

The structure of SAL2, Staphylococcus Aureus Lipase 2 (Geh, LIP2), Apo Form also contains other interesting chemical elements:

Calcium

(Ca)

2 atoms

The binding sites of Zinc atom in the SAL2, Staphylococcus Aureus Lipase 2 (Geh, LIP2), Apo Form (pdb code 8s9r). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the SAL2, Staphylococcus Aureus Lipase 2 (Geh, LIP2), Apo Form, PDB code: 8s9r:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the SAL2, Staphylococcus Aureus Lipase 2 (Geh, LIP2), Apo Form


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of SAL2, Staphylococcus Aureus Lipase 2 (Geh, LIP2), Apo Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:49.0 occ:0.61 OD2 A:ASP236 1.9 54.2 1.0 OD1 A:ASP64 2.0 60.0 1.0 NE2 A:HIS90 2.1 59.0 1.0 NE2 A:HIS84 2.1 57.5 1.0 OD2 A:ASP64 2.3 60.2 1.0 CG A:ASP64 2.5 59.6 1.0 CG A:ASP236 2.9 55.2 1.0 CD2 A:HIS90 2.9 56.5 1.0 CD2 A:HIS84 2.9 56.2 1.0 CE1 A:HIS84 3.1 52.5 1.0 CE1 A:HIS90 3.1 55.4 1.0 OD1 A:ASP236 3.2 55.4 1.0 CB A:ASP64 4.0 52.1 1.0 OG A:SER61 4.1 51.0 1.0 CG A:HIS90 4.1 55.9 1.0 CG A:HIS84 4.1 52.7 1.0 ND1 A:HIS84 4.2 55.6 1.0 ND1 A:HIS90 4.2 56.1 1.0 CB A:ASP236 4.3 52.6 1.0 O A:HOH515 4.3 50.6 1.0 CD1 A:TYR63 4.4 50.9 1.0 CZ2 A:TRP209 4.7 56.2 1.0 CA A:ASP64 4.7 55.3 1.0 N A:ASP64 4.7 53.2 1.0 CE1 A:TYR63 4.9 49.8 1.0 CD1 A:TYR80 5.0 52.7 1.0 O A:ASP236 5.0 55.8 1.0

Zinc binding site 2 out of 2 in the SAL2, Staphylococcus Aureus Lipase 2 (Geh, LIP2), Apo Form


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of SAL2, Staphylococcus Aureus Lipase 2 (Geh, LIP2), Apo Form within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn401 b:70.3 occ:0.68 OD2 B:ASP236 1.9 71.2 1.0 OD1 B:ASP64 2.0 76.6 1.0 NE2 B:HIS90 2.1 72.0 1.0 NE2 B:HIS84 2.1 78.3 1.0 OD2 B:ASP64 2.3 76.5 1.0 CG B:ASP64 2.4 74.4 1.0 CD2 B:HIS84 2.9 79.0 1.0 CG B:ASP236 3.0 71.4 1.0 CD2 B:HIS90 3.0 74.2 1.0 CE1 B:HIS90 3.1 76.5 1.0 CE1 B:HIS84 3.2 75.6 1.0 OD1 B:ASP236 3.4 75.4 1.0 CB B:ASP64 3.9 68.3 1.0 CG B:HIS84 4.1 78.6 1.0 ND1 B:HIS90 4.2 76.2 1.0 CG B:HIS90 4.2 73.0 1.0 OG B:SER61 4.2 66.9 1.0 ND1 B:HIS84 4.2 78.4 1.0 CB B:ASP236 4.3 71.1 1.0 CD1 B:TYR63 4.4 70.4 1.0 CA B:ASP64 4.6 68.1 1.0 N B:ASP64 4.7 68.1 1.0 O B:HOH509 4.7 62.2 1.0 CZ2 B:TRP209 4.8 70.7 1.0 NE2 B:GLN208 4.9 73.6 1.0 CE1 B:TYR63 4.9 70.8 1.0

M.Fellner, M.Fellner. N/A N/A.