Zinc in PDB 8s35: Dna-Bound Type IV-A3 Crispr Effector in Complex with Ding Helicase From K. Pneumoniae (State I)

The binding sites of Zinc atom in the Dna-Bound Type IV-A3 Crispr Effector in Complex with Ding Helicase From K. Pneumoniae (State I) (pdb code 8s35). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Dna-Bound Type IV-A3 Crispr Effector in Complex with Ding Helicase From K. Pneumoniae (State I), PDB code: 8s35:

Zinc binding site 1 out of 1 in the Dna-Bound Type IV-A3 Crispr Effector in Complex with Ding Helicase From K. Pneumoniae (State I)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Dna-Bound Type IV-A3 Crispr Effector in Complex with Ding Helicase From K. Pneumoniae (State I) within 5.0Å range: probe atom residue distance (Å) B Occ G:Zn301 b:208.0 occ:1.00 SG G:CYS33 2.3 180.7 1.0 SG G:CYS58 2.3 185.3 1.0 SG G:CYS61 2.3 179.3 1.0 SG G:CYS30 2.3 184.3 1.0 HB2 G:CYS61 2.6 173.3 1.0 H G:CYS33 2.8 180.1 1.0 H G:CYS58 2.9 177.9 1.0 CB G:CYS61 2.9 171.6 1.0 HB3 G:CYS33 3.0 175.7 1.0 HB3 G:CYS30 3.2 192.6 1.0 CB G:CYS33 3.2 175.7 1.0 CB G:CYS30 3.3 191.7 1.0 HB3 G:CYS61 3.3 172.9 1.0 HB2 G:CYS30 3.4 193.6 1.0 N G:CYS33 3.6 175.7 1.0 HZ G:PHE40 3.6 203.3 1.0 HH12 G:ARG35 3.7 189.3 1.0 N G:CYS58 3.7 174.4 1.0 CB G:CYS58 3.8 180.2 1.0 HB3 G:CYS32 3.8 187.5 1.0 HB3 G:CYS58 3.9 188.7 1.0 NH1 G:ARG35 4.0 192.5 1.0 CA G:CYS33 4.0 175.4 1.0 HH11 G:ARG35 4.0 195.2 1.0 HB2 G:CYS33 4.0 175.2 1.0 HA G:HIS57 4.1 177.2 1.0 CZ G:PHE40 4.2 204.5 1.0 H G:CYS61 4.2 168.7 1.0 CA G:CYS61 4.3 166.4 1.0 CA G:CYS58 4.3 175.4 1.0 H G:GLY34 4.3 183.8 1.0 HG2 G:PRO60 4.4 178.2 1.0 HE1 G:PHE40 4.5 209.3 1.0 HB2 G:CYS58 4.5 185.4 1.0 H G:CYS32 4.5 187.8 1.0 CB G:CYS32 4.5 185.2 1.0 N G:CYS61 4.6 164.4 1.0 SG G:CYS32 4.6 197.3 1.0 HG2 G:ARG35 4.6 201.8 1.0 CE1 G:PHE40 4.6 207.0 1.0 C G:CYS32 4.7 181.2 1.0 HA G:CYS61 4.7 168.6 1.0 CA G:CYS30 4.7 194.4 1.0 HA G:CYS33 4.7 178.4 1.0 CZ G:ARG35 4.7 199.2 1.0 HG G:CYS32 4.8 196.4 1.0 C G:HIS57 4.8 175.5 1.0 CA G:HIS57 4.9 172.2 1.0 HG12 G:VAL5 4.9 172.9 1.0 O G:CYS30 4.9 190.3 1.0 N G:GLY34 4.9 182.6 1.0 HG21 G:VAL5 4.9 174.2 1.0 HH22 G:ARG35 4.9 187.0 1.0 C G:CYS33 5.0 178.8 1.0 HD2 G:PRO60 5.0 176.9 1.0 CE2 G:PHE40 5.0 206.0 1.0 CA G:CYS32 5.0 182.9 1.0 C G:CYS58 5.0 168.2 1.0

R.Cepaite, N.Klein, A.Miksys, S.Camara-Wilpert, V.Ragozius, F.Benz, A.Skorupskaite, H.Becker, G.Zvejyte, N.Steube, G.K.A.Hochberg, L.Randau, R.Pinilla-Redondo, L.Malinauskaite, P.Pausch. Structural Variation of Types IV-A1- and IV-A3-Mediated Crispr Interference. Nat Commun V. 15 9306 2024.
ISSN: ESSN 2041-1723
PubMed: 39468082
DOI: 10.1038/S41467-024-53778-1