Zinc in PDB 8rsm: Crystal Structure of Streptococcus Pyogenes Macrodomain in Complex with Adp-Ribose

The structure of Crystal Structure of Streptococcus Pyogenes Macrodomain in Complex with Adp-Ribose, PDB code: 8rsm was solved by A.Ariza, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.70 / 1.87
Space group	P 41
Cell size a, b, c (Å), α, β, γ (°)	41.704, 41.704, 137.895, 90, 90, 90
R / Rfree (%)	15.3 / 20.1

The binding sites of Zinc atom in the Crystal Structure of Streptococcus Pyogenes Macrodomain in Complex with Adp-Ribose (pdb code 8rsm). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Streptococcus Pyogenes Macrodomain in Complex with Adp-Ribose, PDB code: 8rsm:

Zinc binding site 1 out of 1 in the Crystal Structure of Streptococcus Pyogenes Macrodomain in Complex with Adp-Ribose


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Streptococcus Pyogenes Macrodomain in Complex with Adp-Ribose within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:26.4 occ:1.00 ND1 A:HIS117 2.1 38.3 1.0 O1D A:AR6302 2.1 29.7 1.0 SG A:CYS119 2.2 20.6 1.0 SG A:CYS112 2.3 24.9 1.0 CE1 A:HIS117 3.0 43.8 1.0 CG A:HIS117 3.1 37.9 1.0 CB A:CYS112 3.2 23.8 1.0 C1D A:AR6302 3.2 28.5 1.0 CB A:CYS119 3.3 20.2 1.0 CB A:HIS117 3.4 41.6 1.0 O A:HOH488 4.1 41.4 1.0 NE2 A:HIS117 4.2 42.5 1.0 O4D A:AR6302 4.2 24.4 1.0 CD2 A:HIS117 4.2 45.7 1.0 O2D A:AR6302 4.3 25.4 1.0 C2D A:AR6302 4.4 23.9 1.0 N A:CYS119 4.5 22.2 1.0 CA A:CYS112 4.5 23.4 1.0 CA A:CYS119 4.5 21.5 1.0 CB A:ASN122 4.5 17.8 1.0 CA A:HIS117 4.8 39.4 1.0 CB A:SER114 4.9 34.2 1.0 N A:ASN122 4.9 17.7 1.0

A.Ariza, Q.Liu, N.Cowleson, I.Ahel, D.V.Filippov, J.G.M.Rack. Evolutionary and Molecular Basis of Adp-Ribosylation Reversal By Zinc-Dependent Macrodomains To Be Published.