Zinc in PDB 8rfj: Dna Bound Type IV-A1 Crispr Effector Complex with the Ding Helicase From P. Oleovorans

The binding sites of Zinc atom in the Dna Bound Type IV-A1 Crispr Effector Complex with the Ding Helicase From P. Oleovorans (pdb code 8rfj). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Dna Bound Type IV-A1 Crispr Effector Complex with the Ding Helicase From P. Oleovorans, PDB code: 8rfj:

Zinc binding site 1 out of 1 in the Dna Bound Type IV-A1 Crispr Effector Complex with the Ding Helicase From P. Oleovorans


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Dna Bound Type IV-A1 Crispr Effector Complex with the Ding Helicase From P. Oleovorans within 5.0Å range: probe atom residue distance (Å) B Occ G:Zn301 b:104.2 occ:1.00 SG G:CYS33 2.3 78.5 1.0 SG G:CYS69 2.3 77.6 1.0 SG G:CYS66 2.3 75.0 1.0 SG G:CYS30 2.3 79.5 1.0 CB G:CYS30 3.2 79.5 1.0 CB G:CYS69 3.3 77.6 1.0 CB G:CYS33 3.4 78.5 1.0 N G:CYS33 3.7 78.5 1.0 CB G:CYS66 3.8 75.0 1.0 N G:CYS66 4.0 75.0 1.0 CA G:CYS33 4.1 78.5 1.0 CB G:SER5 4.3 78.7 1.0 N G:CYS69 4.3 77.6 1.0 CA G:CYS69 4.4 77.6 1.0 CA G:CYS66 4.4 75.0 1.0 CB G:HIS32 4.5 75.4 1.0 OG G:SER5 4.5 78.7 1.0 CA G:CYS30 4.7 79.5 1.0 C G:HIS32 4.7 75.4 1.0 C G:CYS33 4.8 78.5 1.0 CB G:ARG35 4.8 77.0 1.0 O G:CYS66 4.8 75.0 1.0 N G:HIS32 4.8 75.4 1.0 CA G:HIS32 4.9 75.4 1.0 C G:CYS66 4.9 75.0 1.0 N G:ALA34 5.0 80.1 1.0

R.Cepaite, N.Klein, A.Miksys, S.Camara-Wilpert, V.Ragozius, F.Benz, A.Skorupskaite, H.Becker, G.Zvejyte, N.Steube, G.K.A.Hochberg, L.Randau, R.Pinilla-Redondo, L.Malinauskaite, P.Pausch. Structural Variation of Types IV-A1- and IV-A3-Mediated Crispr Interference. Nat Commun V. 15 9306 2024.
ISSN: ESSN 2041-1723
PubMed: 39468082
DOI: 10.1038/S41467-024-53778-1