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Zinc in PDB 8pib: Autoinhibited Rfah Bound to E. Coli Transcription Complex Paused at Ops Site (Encounter Complex)

Enzymatic activity of Autoinhibited Rfah Bound to E. Coli Transcription Complex Paused at Ops Site (Encounter Complex)

All present enzymatic activity of Autoinhibited Rfah Bound to E. Coli Transcription Complex Paused at Ops Site (Encounter Complex):
2.7.7.6;

Other elements in 8pib:

The structure of Autoinhibited Rfah Bound to E. Coli Transcription Complex Paused at Ops Site (Encounter Complex) also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Autoinhibited Rfah Bound to E. Coli Transcription Complex Paused at Ops Site (Encounter Complex) (pdb code 8pib). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Autoinhibited Rfah Bound to E. Coli Transcription Complex Paused at Ops Site (Encounter Complex), PDB code: 8pib:

Zinc binding site 1 out of 1 in 8pib

Go back to Zinc Binding Sites List in 8pib
Zinc binding site 1 out of 1 in the Autoinhibited Rfah Bound to E. Coli Transcription Complex Paused at Ops Site (Encounter Complex)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Autoinhibited Rfah Bound to E. Coli Transcription Complex Paused at Ops Site (Encounter Complex) within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Zn1501

b:127.0
occ:1.00
 SG J:CYS888 2.3 96.5 1.0
SG J:CYS814 2.3 99.4 1.0
SG J:CYS895 2.3 90.4 1.0
SG J:CYS898 2.3 96.5 1.0
CB J:CYS898 2.5 79.8 1.0
CB J:CYS895 3.0 74.1 1.0
CB J:CYS814 3.6 84.5 1.0
CB J:CYS888 3.7 82.0 1.0
CA J:CYS898 3.8 70.4 1.0
N J:CYS895 3.8 71.0 1.0
CA J:CYS888 3.8 78.4 1.0
N J:CYS898 3.9 75.5 1.0
CA J:CYS895 3.9 66.2 1.0
NH2 J:ARG883 4.0 74.8 1.0
N J:CYS814 4.1 92.1 1.0
N J:ASP889 4.2 85.4 1.0
O J:CYS895 4.4 80.6 1.0
C J:CYS895 4.5 73.8 1.0
C J:CYS888 4.5 83.0 1.0
CA J:CYS814 4.5 86.1 1.0
OG1 J:THR890 4.6 93.0 1.0
N J:THR890 4.8 91.3 1.0
C J:CYS898 4.9 68.6 1.0

Reference:

P.K.Zuber, N.Said, T.Hilal, B.Wang, B.Loll, J.Gonzalez-Higueras, C.A.Ramirez-Sarmiento, G.A.Belogurov, I.Artsimovitch, M.C.Wahl, S.H.Knauer. Concerted Transformation of A Hyper-Paused Transcription Complex and Its Reinforcing Protein. Nat Commun V. 15 3040 2024.
ISSN: ESSN 2041-1723
PubMed: 38589445
DOI: 10.1038/S41467-024-47368-4
Page generated: Fri Aug 22 12:22:46 2025

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