Zinc in PDB 8gu6: Structure of the SBCAS7-11-Crrna-Ntr-CSX29 Complex

The binding sites of Zinc atom in the Structure of the SBCAS7-11-Crrna-Ntr-CSX29 Complex (pdb code 8gu6). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Structure of the SBCAS7-11-Crrna-Ntr-CSX29 Complex, PDB code: 8gu6:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Structure of the SBCAS7-11-Crrna-Ntr-CSX29 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the SBCAS7-11-Crrna-Ntr-CSX29 Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1801 b:88.1 occ:1.00 SG A:CYS491 2.3 56.9 1.0 SG A:CYS503 2.3 51.4 1.0 SG A:CYS501 2.3 43.3 1.0 SG A:CYS506 2.3 42.4 1.0 CB A:CYS506 3.1 22.4 1.0 CB A:CYS491 3.2 38.9 1.0 CB A:CYS501 3.3 28.7 1.0 CB A:CYS503 3.6 38.0 1.0 N A:CYS503 4.2 32.3 1.0 CA A:CYS506 4.3 23.4 1.0 N A:CYS506 4.3 32.4 1.0 CA A:CYS491 4.4 30.7 1.0 CA A:CYS503 4.4 30.6 1.0 N A:CYS491 4.5 22.8 1.0 CA A:CYS501 4.5 34.6 1.0 C A:CYS501 4.6 31.2 1.0 O A:CYS501 4.7 33.5 1.0 CG1 A:VAL505 4.8 42.1 1.0 NH1 A:ARG480 4.9 30.2 1.0 C A:CYS503 5.0 37.4 1.0 N A:ASN502 5.0 29.0 1.0 C A:CYS491 5.0 43.3 1.0

Zinc binding site 2 out of 4 in the Structure of the SBCAS7-11-Crrna-Ntr-CSX29 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of the SBCAS7-11-Crrna-Ntr-CSX29 Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1802 b:117.8 occ:1.00 SG A:CYS127 2.3 50.4 1.0 SG A:CYS88 2.3 52.9 1.0 SG A:CYS121 2.3 80.1 1.0 SG A:CYS130 2.3 49.4 1.0 CB A:CYS88 3.3 44.2 1.0 CB A:CYS121 3.4 71.6 1.0 CB A:CYS130 3.5 36.8 1.0 CB A:CYS127 3.6 44.4 1.0 N A:CYS127 4.1 47.8 1.0 N A:CYS130 4.2 40.5 1.0 N A:CYS88 4.3 45.6 1.0 CA A:CYS88 4.4 41.6 1.0 CA A:CYS130 4.4 37.3 1.0 CA A:CYS127 4.5 49.6 1.0 NH2 A:ARG135 4.5 38.5 1.0 N A:GLY90 4.7 27.3 1.0 CA A:GLY90 4.8 31.2 1.0 CA A:CYS121 4.8 73.9 1.0 O A:CYS127 4.9 52.2 1.0 C A:CYS88 4.9 41.0 1.0 C A:CYS127 5.0 51.1 1.0

Zinc binding site 3 out of 4 in the Structure of the SBCAS7-11-Crrna-Ntr-CSX29 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structure of the SBCAS7-11-Crrna-Ntr-CSX29 Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1803 b:115.9 occ:1.00 CE1 A:HIS747 1.7 86.8 1.0 ND1 A:HIS747 2.1 87.2 1.0 SG A:CYS752 2.3 72.3 1.0 SG A:CYS755 2.3 66.1 1.0 SG A:CYS750 2.3 94.3 1.0 CB A:CYS755 2.9 60.8 1.0 NE2 A:HIS747 3.0 82.5 1.0 CB A:CYS752 3.0 70.0 1.0 CB A:CYS750 3.3 87.5 1.0 CG A:HIS747 3.4 84.6 1.0 N A:CYS752 3.8 72.9 1.0 CD2 A:HIS747 3.8 81.2 1.0 CA A:CYS752 4.0 74.0 1.0 N A:CYS755 4.0 61.1 1.0 CA A:CYS755 4.0 57.0 1.0 CA A:CYS750 4.5 86.7 1.0 C A:CYS750 4.5 85.7 1.0 CB A:HIS747 4.6 86.6 1.0 C A:CYS752 4.7 77.3 1.0 O A:CYS750 4.8 82.8 1.0 N A:THR751 4.8 79.6 1.0 O A:CYS752 4.9 78.2 1.0 C A:THR751 5.0 81.1 1.0

Zinc binding site 4 out of 4 in the Structure of the SBCAS7-11-Crrna-Ntr-CSX29 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Structure of the SBCAS7-11-Crrna-Ntr-CSX29 Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1804 b:126.4 occ:1.00 SG A:CYS1018 2.3 82.9 1.0 SG A:CYS1417 2.3 64.7 1.0 SG A:CYS1406 2.3 87.6 1.0 SG A:CYS1414 2.3 79.2 1.0 CB A:CYS1414 2.9 62.7 1.0 CB A:CYS1018 3.3 82.9 1.0 CB A:CYS1417 3.6 53.5 1.0 CB A:CYS1406 3.6 86.6 1.0 N A:CYS1414 3.7 66.4 1.0 NH1 A:ARG935 3.8 84.9 1.0 CA A:CYS1414 3.9 63.1 1.0 N A:CYS1018 3.9 82.1 1.0 CZ A:ARG935 4.1 83.6 1.0 CA A:CYS1018 4.2 83.3 1.0 OG A:SER1017 4.2 71.8 1.0 N A:CYS1406 4.3 90.4 1.0 CA A:CYS1406 4.4 88.8 1.0 NH2 A:ARG935 4.4 84.0 1.0 O A:HIS1404 4.7 93.0 1.0 C A:CYS1018 4.7 81.6 1.0 O A:CYS1018 4.8 77.5 1.0 NE A:ARG935 4.8 84.3 1.0 C A:LEU1413 4.9 65.0 1.0 CA A:CYS1417 4.9 52.7 1.0 C A:CYS1414 5.0 65.5 1.0 N A:CYS1417 5.0 55.6 1.0

X.Wang, G.Yu, Y.Wen, Q.An, X.Li, F.Liao, C.Lian, K.Zhang, H.Yin, Y.Wei, Z.Deng, H.Zhang. Target Rna-Guided Protease Activity in Type III-E Crispr-Cas System. Nucleic Acids Res. V. 50 12913 2022.
ISSN: ESSN 1362-4962
PubMed: 36484100
DOI: 10.1093/NAR/GKAC1151