Zinc in PDB 8axv: Structure of An Open Form of Chikv NSP1 Capping Pores

Zinc Binding Sites:

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>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Zinc atom in the Structure of An Open Form of Chikv NSP1 Capping Pores (pdb code 8axv). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 12 binding sites of Zinc where determined in the Structure of An Open Form of Chikv NSP1 Capping Pores, PDB code: 8axv:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 12 in 8axv

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Zinc binding site 1 out of 12 in the Structure of An Open Form of Chikv NSP1 Capping Pores


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Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of An Open Form of Chikv NSP1 Capping Pores within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1001

b:116.1
occ:1.00
 NE2 A:HIS79 2.3 85.8 1.0
SG A:CYS141 2.3 88.4 1.0
CE1 A:HIS79 2.8 85.6 1.0
OE1 A:GLU129 2.9 91.4 1.0
CB A:GLN143 3.0 86.5 1.0
N A:GLN143 3.1 85.5 1.0
CD2 A:HIS79 3.5 85.7 1.0
SG A:CYS134 3.6 82.5 1.0
CB A:CYS134 3.6 82.5 1.0
CA A:GLN143 3.7 85.8 1.0
N A:ARG142 3.7 89.2 1.0
CB A:CYS141 3.9 86.5 1.0
ND1 A:HIS79 4.0 86.5 1.0
CD A:GLU129 4.1 90.9 1.0
C A:ARG142 4.2 87.8 1.0
CG A:GLN143 4.3 85.0 1.0
CA A:CYS141 4.4 86.2 1.0
CG A:HIS79 4.4 85.6 1.0
C A:CYS141 4.5 87.4 1.0
CA A:ARG142 4.5 88.8 1.0
OE2 A:GLU129 4.6 90.8 1.0
C A:GLN143 4.8 86.2 1.0
O A:GLN143 4.9 86.6 1.0

Zinc binding site 2 out of 12 in 8axv

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Zinc binding site 2 out of 12 in the Structure of An Open Form of Chikv NSP1 Capping Pores


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of An Open Form of Chikv NSP1 Capping Pores within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn1001

b:117.8
occ:1.00
 SG B:CYS141 2.3 80.3 1.0
NE2 B:HIS79 2.3 82.7 1.0
CE1 B:HIS79 2.8 82.8 1.0
OE1 B:GLU129 3.0 88.8 1.0
CB B:GLN143 3.1 80.4 1.0
N B:GLN143 3.3 80.3 1.0
CB B:CYS134 3.5 85.3 1.0
SG B:CYS134 3.5 85.1 1.0
CD2 B:HIS79 3.5 82.8 1.0
N B:ARG142 3.8 82.9 1.0
CA B:GLN143 3.8 80.2 1.0
CB B:CYS141 3.9 79.1 1.0
ND1 B:HIS79 4.0 83.5 1.0
CD B:GLU129 4.1 88.7 1.0
C B:ARG142 4.4 80.8 1.0
CG B:GLN143 4.4 80.7 1.0
CA B:CYS141 4.4 78.1 1.0
CG B:HIS79 4.4 83.2 1.0
C B:CYS141 4.6 79.8 1.0
OE2 B:GLU129 4.6 88.8 1.0
CA B:ARG142 4.6 81.2 1.0
O B:PHE133 4.8 84.1 1.0
C B:GLN143 4.9 81.9 1.0
CA B:CYS134 4.9 84.9 1.0

Zinc binding site 3 out of 12 in 8axv

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Zinc binding site 3 out of 12 in the Structure of An Open Form of Chikv NSP1 Capping Pores


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structure of An Open Form of Chikv NSP1 Capping Pores within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn1001

b:115.0
occ:1.00
 SG C:CYS141 2.3 82.6 1.0
NE2 C:HIS79 2.3 83.4 1.0
CE1 C:HIS79 2.8 83.2 1.0
OE1 C:GLU129 2.9 92.6 1.0
CB C:GLN143 3.0 88.3 1.0
N C:GLN143 3.1 86.8 1.0
CD2 C:HIS79 3.5 83.5 1.0
SG C:CYS134 3.6 83.0 1.0
CB C:CYS134 3.7 84.5 1.0
CA C:GLN143 3.7 87.4 1.0
N C:ARG142 3.8 88.7 1.0
CB C:CYS141 3.9 81.5 1.0
ND1 C:HIS79 4.0 84.5 1.0
CD C:GLU129 4.0 93.1 1.0
C C:ARG142 4.2 87.1 1.0
CG C:GLN143 4.3 87.4 1.0
CG C:HIS79 4.4 83.5 1.0
CA C:CYS141 4.4 81.3 1.0
CA C:ARG142 4.5 87.7 1.0
C C:CYS141 4.5 82.5 1.0
OE2 C:GLU129 4.5 94.1 1.0
C C:GLN143 4.8 88.5 1.0
O C:GLN143 4.9 89.0 1.0
O C:PHE133 4.9 85.2 1.0

Zinc binding site 4 out of 12 in 8axv

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Zinc binding site 4 out of 12 in the Structure of An Open Form of Chikv NSP1 Capping Pores


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Structure of An Open Form of Chikv NSP1 Capping Pores within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn1001

b:117.4
occ:1.00
 SG D:CYS141 2.3 86.7 1.0
NE2 D:HIS79 2.3 84.6 1.0
CE1 D:HIS79 2.8 84.4 1.0
OE1 D:GLU129 2.9 90.9 1.0
CB D:GLN143 3.0 86.7 1.0
N D:GLN143 3.1 85.8 1.0
CD2 D:HIS79 3.5 84.7 1.0
SG D:CYS134 3.6 81.3 1.0
CB D:CYS134 3.6 81.4 1.0
CA D:GLN143 3.7 86.3 1.0
N D:ARG142 3.7 89.7 1.0
CB D:CYS141 3.9 84.8 1.0
ND1 D:HIS79 4.0 85.3 1.0
CD D:GLU129 4.1 90.3 1.0
C D:ARG142 4.2 88.3 1.0
CG D:GLN143 4.3 85.3 1.0
CA D:CYS141 4.4 84.5 1.0
CG D:HIS79 4.4 84.6 1.0
C D:CYS141 4.5 85.9 1.0
CA D:ARG142 4.5 89.2 1.0
OE2 D:GLU129 4.6 90.2 1.0
C D:GLN143 4.8 87.0 1.0
O D:GLN143 4.9 87.5 1.0

Zinc binding site 5 out of 12 in 8axv

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Zinc binding site 5 out of 12 in the Structure of An Open Form of Chikv NSP1 Capping Pores


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Structure of An Open Form of Chikv NSP1 Capping Pores within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn1001

b:116.3
occ:1.00
 SG E:CYS141 2.3 79.5 1.0
NE2 E:HIS79 2.3 83.1 1.0
CE1 E:HIS79 2.8 83.1 1.0
OE1 E:GLU129 3.0 87.5 1.0
CB E:GLN143 3.1 80.4 1.0
N E:GLN143 3.3 80.2 1.0
CB E:CYS134 3.5 84.7 1.0
SG E:CYS134 3.5 84.5 1.0
CD2 E:HIS79 3.5 83.0 1.0
CA E:GLN143 3.8 80.3 1.0
N E:ARG142 3.8 81.6 1.0
CB E:CYS141 3.9 78.4 1.0
ND1 E:HIS79 4.0 84.0 1.0
CD E:GLU129 4.1 87.6 1.0
C E:ARG142 4.4 79.7 1.0
CG E:GLN143 4.4 80.6 1.0
CA E:CYS141 4.4 77.4 1.0
CG E:HIS79 4.4 83.4 1.0
C E:CYS141 4.6 78.7 1.0
OE2 E:GLU129 4.6 88.1 1.0
CA E:ARG142 4.6 79.9 1.0
O E:PHE133 4.8 83.0 1.0
C E:GLN143 4.9 81.9 1.0
CA E:CYS134 4.9 84.5 1.0

Zinc binding site 6 out of 12 in 8axv

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Zinc binding site 6 out of 12 in the Structure of An Open Form of Chikv NSP1 Capping Pores


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Structure of An Open Form of Chikv NSP1 Capping Pores within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Zn1001

b:113.1
occ:1.00
 SG F:CYS141 2.3 82.2 1.0
NE2 F:HIS79 2.3 83.0 1.0
CE1 F:HIS79 2.8 82.7 1.0
OE1 F:GLU129 2.9 93.7 1.0
CB F:GLN143 3.0 87.6 1.0
N F:GLN143 3.1 85.9 1.0
CD2 F:HIS79 3.5 83.1 1.0
SG F:CYS134 3.6 81.9 1.0
CB F:CYS134 3.7 83.0 1.0
CA F:GLN143 3.7 86.7 1.0
N F:ARG142 3.8 89.3 1.0
CB F:CYS141 3.9 80.6 1.0
ND1 F:HIS79 4.0 83.9 1.0
CD F:GLU129 4.0 94.2 1.0
C F:ARG142 4.2 88.1 1.0
CG F:GLN143 4.3 86.5 1.0
CG F:HIS79 4.4 83.1 1.0
CA F:CYS141 4.4 80.1 1.0
CA F:ARG142 4.5 88.8 1.0
C F:CYS141 4.5 81.3 1.0
OE2 F:GLU129 4.5 94.9 1.0
C F:GLN143 4.8 87.9 1.0
O F:GLN143 4.9 88.3 1.0
O F:PHE133 4.9 85.0 1.0

Zinc binding site 7 out of 12 in 8axv

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Zinc binding site 7 out of 12 in the Structure of An Open Form of Chikv NSP1 Capping Pores


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Structure of An Open Form of Chikv NSP1 Capping Pores within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Zn1001

b:116.3
occ:1.00
 SG G:CYS141 2.3 87.5 1.0
NE2 G:HIS79 2.3 85.5 1.0
CE1 G:HIS79 2.8 85.2 1.0
OE1 G:GLU129 2.9 91.3 1.0
CB G:GLN143 3.0 87.5 1.0
N G:GLN143 3.1 86.8 1.0
CD2 G:HIS79 3.5 85.4 1.0
SG G:CYS134 3.6 80.8 1.0
CB G:CYS134 3.6 81.1 1.0
CA G:GLN143 3.7 87.3 1.0
N G:ARG142 3.7 89.5 1.0
CB G:CYS141 3.9 85.6 1.0
ND1 G:HIS79 4.0 86.1 1.0
CD G:GLU129 4.1 90.7 1.0
C G:ARG142 4.2 88.5 1.0
CG G:GLN143 4.3 86.2 1.0
CA G:CYS141 4.4 85.4 1.0
CG G:HIS79 4.4 85.3 1.0
C G:CYS141 4.5 86.4 1.0
CA G:ARG142 4.5 89.3 1.0
OE2 G:GLU129 4.6 90.6 1.0
C G:GLN143 4.8 87.7 1.0
O G:GLN143 4.9 88.3 1.0

Zinc binding site 8 out of 12 in 8axv

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Zinc binding site 8 out of 12 in the Structure of An Open Form of Chikv NSP1 Capping Pores


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Structure of An Open Form of Chikv NSP1 Capping Pores within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Zn1001

b:115.1
occ:1.00
 NE2 H:HIS79 2.3 83.4 1.0
SG H:CYS141 2.3 78.2 1.0
CE1 H:HIS79 2.8 83.5 1.0
OE1 H:GLU129 3.0 87.3 1.0
CB H:GLN143 3.1 79.7 1.0
N H:GLN143 3.3 79.2 1.0
CB H:CYS134 3.4 83.8 1.0
SG H:CYS134 3.5 83.5 1.0
CD2 H:HIS79 3.5 83.4 1.0
CA H:GLN143 3.8 79.6 1.0
N H:ARG142 3.8 80.0 1.0
CB H:CYS141 3.9 76.8 1.0
ND1 H:HIS79 4.0 84.1 1.0
CD H:GLU129 4.1 87.1 1.0
C H:ARG142 4.4 78.1 1.0
CG H:GLN143 4.4 79.9 1.0
CG H:HIS79 4.4 83.7 1.0
CA H:CYS141 4.4 75.8 1.0
C H:CYS141 4.6 77.3 1.0
OE2 H:GLU129 4.6 87.3 1.0
CA H:ARG142 4.6 78.3 1.0
CA H:CYS134 4.9 83.6 1.0
C H:GLN143 4.9 81.1 1.0
O H:PHE133 5.0 83.0 1.0

Zinc binding site 9 out of 12 in 8axv

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Zinc binding site 9 out of 12 in the Structure of An Open Form of Chikv NSP1 Capping Pores


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Structure of An Open Form of Chikv NSP1 Capping Pores within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Zn1001

b:112.9
occ:1.00
 SG I:CYS141 2.3 82.6 1.0
NE2 I:HIS79 2.3 80.5 1.0
CE1 I:HIS79 2.8 80.4 1.0
OE1 I:GLU129 2.9 91.7 1.0
CB I:GLN143 3.0 85.8 1.0
N I:GLN143 3.1 84.4 1.0
CD2 I:HIS79 3.5 80.8 1.0
SG I:CYS134 3.6 82.2 1.0
CB I:CYS134 3.7 83.8 1.0
CA I:GLN143 3.7 85.2 1.0
N I:ARG142 3.8 87.9 1.0
CB I:CYS141 3.9 81.3 1.0
ND1 I:HIS79 4.0 81.7 1.0
CD I:GLU129 4.0 92.2 1.0
C I:ARG142 4.2 86.4 1.0
CG I:GLN143 4.3 84.9 1.0
CG I:HIS79 4.4 80.8 1.0
CA I:CYS141 4.4 81.1 1.0
CA I:ARG142 4.5 87.0 1.0
C I:CYS141 4.5 82.1 1.0
OE2 I:GLU129 4.5 93.0 1.0
C I:GLN143 4.8 86.4 1.0
O I:PHE133 4.9 84.9 1.0
O I:GLN143 4.9 86.9 1.0

Zinc binding site 10 out of 12 in 8axv

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Zinc binding site 10 out of 12 in the Structure of An Open Form of Chikv NSP1 Capping Pores


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of Structure of An Open Form of Chikv NSP1 Capping Pores within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Zn1001

b:118.9
occ:1.00
 SG J:CYS141 2.3 88.1 1.0
NE2 J:HIS79 2.3 85.8 1.0
CE1 J:HIS79 2.8 85.3 1.0
OE1 J:GLU129 2.9 92.7 1.0
CB J:GLN143 3.0 87.8 1.0
N J:GLN143 3.1 86.9 1.0
CD2 J:HIS79 3.5 85.7 1.0
SG J:CYS134 3.6 81.2 1.0
CB J:CYS134 3.6 81.5 1.0
CA J:GLN143 3.7 87.3 1.0
N J:ARG142 3.7 90.7 1.0
CB J:CYS141 3.9 85.7 1.0
ND1 J:HIS79 4.0 86.3 1.0
CD J:GLU129 4.1 92.1 1.0
C J:ARG142 4.2 89.3 1.0
CG J:GLN143 4.3 86.3 1.0
CA J:CYS141 4.4 85.3 1.0
CG J:HIS79 4.4 85.5 1.0
C J:CYS141 4.5 86.7 1.0
CA J:ARG142 4.5 90.2 1.0
OE2 J:GLU129 4.6 92.0 1.0
C J:GLN143 4.8 87.8 1.0
O J:GLN143 4.9 88.4 1.0

Reference:

R.Jones, M.Hons, N.Rabah, N.Zamarreno, R.Arranz, J.Reguera. Structural Basis and Dynamics of Chikungunya Alphavirus Rna Capping By NSP1 Capping Pores. Proc.Natl.Acad.Sci.Usa V. 120 34120 2023.
ISSN: ESSN 1091-6490
PubMed: 36913573
DOI: 10.1073/PNAS.2213934120
Page generated: Wed Oct 30 18:02:52 2024

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