Zinc in PDB 8aov: Cryoem Structure of the Chikungunya Virus NSP1 Capping Pores in Complex with Gtp
Zinc Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Zinc atom in the Cryoem Structure of the Chikungunya Virus NSP1 Capping Pores in Complex with Gtp
(pdb code 8aov). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 12 binding sites of Zinc where determined in the
Cryoem Structure of the Chikungunya Virus NSP1 Capping Pores in Complex with Gtp, PDB code: 8aov:
Jump to Zinc binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Zinc binding site 1 out
of 12 in 8aov
Go back to
Zinc Binding Sites List in 8aov
Zinc binding site 1 out
of 12 in the Cryoem Structure of the Chikungunya Virus NSP1 Capping Pores in Complex with Gtp
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Cryoem Structure of the Chikungunya Virus NSP1 Capping Pores in Complex with Gtp within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn601
b:151.7
occ:1.00
|
CB
|
A:CYS134
|
2.1
|
103.3
|
1.0
|
|
OE1
|
A:GLU129
|
2.2
|
108.4
|
1.0
|
|
NE2
|
A:HIS79
|
2.3
|
87.7
|
1.0
|
|
SG
|
A:CYS141
|
2.3
|
76.3
|
1.0
|
|
SG
|
A:CYS134
|
2.3
|
103.9
|
1.0
|
|
CE1
|
A:HIS79
|
2.8
|
87.8
|
1.0
|
|
CD
|
A:GLU129
|
3.3
|
108.6
|
1.0
|
|
CA
|
A:CYS134
|
3.6
|
103.8
|
1.0
|
|
CD2
|
A:HIS79
|
3.6
|
87.2
|
1.0
|
|
OE2
|
A:GLU129
|
3.7
|
108.3
|
1.0
|
|
CB
|
A:CYS141
|
3.8
|
75.3
|
1.0
|
|
ND1
|
A:HIS79
|
4.1
|
86.6
|
1.0
|
|
CB
|
A:GLN143
|
4.2
|
85.1
|
1.0
|
|
N
|
A:CYS134
|
4.3
|
103.8
|
1.0
|
|
CA
|
A:CYS141
|
4.4
|
76.2
|
1.0
|
|
O
|
A:PHE133
|
4.4
|
103.3
|
1.0
|
|
CA
|
A:GLU129
|
4.5
|
108.2
|
1.0
|
|
CG
|
A:HIS79
|
4.5
|
86.6
|
1.0
|
|
CG
|
A:GLU129
|
4.5
|
108.7
|
1.0
|
|
CB
|
A:VAL81
|
4.5
|
61.1
|
1.0
|
|
C
|
A:CYS134
|
4.6
|
103.5
|
1.0
|
|
CB
|
A:GLU129
|
4.6
|
108.5
|
1.0
|
|
C
|
A:PHE133
|
4.7
|
103.7
|
1.0
|
|
N
|
A:GLN143
|
4.7
|
85.0
|
1.0
|
|
N
|
A:ARG142
|
4.8
|
97.2
|
1.0
|
|
N
|
A:LEU135
|
4.9
|
96.7
|
1.0
|
|
CG2
|
A:VAL81
|
4.9
|
61.5
|
1.0
|
|
O
|
A:THR128
|
5.0
|
96.5
|
1.0
|
|
Zinc binding site 2 out
of 12 in 8aov
Go back to
Zinc Binding Sites List in 8aov
Zinc binding site 2 out
of 12 in the Cryoem Structure of the Chikungunya Virus NSP1 Capping Pores in Complex with Gtp
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Cryoem Structure of the Chikungunya Virus NSP1 Capping Pores in Complex with Gtp within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Zn601
b:150.4
occ:1.00
|
CB
|
C:CYS134
|
1.8
|
99.5
|
1.0
|
|
CE1
|
C:HIS79
|
2.2
|
82.2
|
1.0
|
|
SG
|
C:CYS141
|
2.3
|
77.4
|
1.0
|
|
SG
|
C:CYS134
|
2.3
|
100.1
|
1.0
|
|
NE2
|
C:HIS79
|
2.3
|
81.8
|
1.0
|
|
OE1
|
C:GLU129
|
2.8
|
107.1
|
1.0
|
|
CA
|
C:CYS134
|
3.3
|
98.6
|
1.0
|
|
ND1
|
C:HIS79
|
3.5
|
81.9
|
1.0
|
|
CD2
|
C:HIS79
|
3.7
|
81.5
|
1.0
|
|
CD
|
C:GLU129
|
3.8
|
108.0
|
1.0
|
|
CB
|
C:CYS141
|
3.8
|
77.3
|
1.0
|
|
N
|
C:CYS134
|
4.0
|
98.8
|
1.0
|
|
OE2
|
C:GLU129
|
4.1
|
107.7
|
1.0
|
|
CB
|
C:VAL81
|
4.1
|
62.0
|
1.0
|
|
C
|
C:CYS134
|
4.2
|
98.3
|
1.0
|
|
CG
|
C:HIS79
|
4.2
|
81.8
|
1.0
|
|
CB
|
C:GLN143
|
4.3
|
77.8
|
1.0
|
|
O
|
C:PHE133
|
4.5
|
92.6
|
1.0
|
|
C
|
C:PHE133
|
4.5
|
92.5
|
1.0
|
|
CA
|
C:CYS141
|
4.6
|
78.0
|
1.0
|
|
CG2
|
C:VAL81
|
4.6
|
62.1
|
1.0
|
|
N
|
C:LEU135
|
4.7
|
89.3
|
1.0
|
|
O
|
C:CYS134
|
4.8
|
98.5
|
1.0
|
|
CA
|
C:GLU129
|
4.8
|
107.3
|
1.0
|
|
CA
|
C:VAL81
|
4.9
|
62.1
|
1.0
|
|
CG1
|
C:VAL81
|
5.0
|
60.1
|
1.0
|
|
Zinc binding site 3 out
of 12 in 8aov
Go back to
Zinc Binding Sites List in 8aov
Zinc binding site 3 out
of 12 in the Cryoem Structure of the Chikungunya Virus NSP1 Capping Pores in Complex with Gtp
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of Cryoem Structure of the Chikungunya Virus NSP1 Capping Pores in Complex with Gtp within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Zn601
b:166.6
occ:1.00
|
CB
|
E:CYS134
|
1.9
|
106.2
|
1.0
|
|
CE1
|
E:HIS79
|
1.9
|
87.0
|
1.0
|
|
SG
|
E:CYS141
|
2.3
|
86.8
|
1.0
|
|
SG
|
E:CYS134
|
2.3
|
105.7
|
1.0
|
|
NE2
|
E:HIS79
|
2.3
|
87.0
|
1.0
|
|
OE1
|
E:GLU129
|
2.9
|
111.3
|
1.0
|
|
ND1
|
E:HIS79
|
3.2
|
86.3
|
1.0
|
|
CA
|
E:CYS134
|
3.4
|
105.4
|
1.0
|
|
CD2
|
E:HIS79
|
3.7
|
85.7
|
1.0
|
|
CD
|
E:GLU129
|
3.9
|
111.5
|
1.0
|
|
N
|
E:CYS134
|
4.0
|
105.6
|
1.0
|
|
CB
|
E:CYS141
|
4.0
|
86.0
|
1.0
|
|
CG
|
E:HIS79
|
4.0
|
85.5
|
1.0
|
|
O
|
E:PHE133
|
4.2
|
98.5
|
1.0
|
|
CB
|
E:GLN143
|
4.2
|
81.6
|
1.0
|
|
C
|
E:CYS134
|
4.3
|
105.0
|
1.0
|
|
CB
|
E:VAL81
|
4.3
|
59.8
|
1.0
|
|
OE2
|
E:GLU129
|
4.3
|
110.6
|
1.0
|
|
C
|
E:PHE133
|
4.3
|
98.8
|
1.0
|
|
O
|
E:CYS134
|
4.7
|
104.7
|
1.0
|
|
CA
|
E:GLU129
|
4.7
|
111.3
|
1.0
|
|
O
|
E:THR130
|
4.8
|
89.9
|
1.0
|
|
CA
|
E:CYS141
|
4.8
|
86.2
|
1.0
|
|
CG2
|
E:VAL81
|
4.8
|
59.2
|
1.0
|
|
CB
|
E:GLU129
|
5.0
|
111.5
|
1.0
|
|
CG
|
E:GLN143
|
5.0
|
82.5
|
1.0
|
|
CG1
|
E:VAL81
|
5.0
|
57.0
|
1.0
|
|
Zinc binding site 4 out
of 12 in 8aov
Go back to
Zinc Binding Sites List in 8aov
Zinc binding site 4 out
of 12 in the Cryoem Structure of the Chikungunya Virus NSP1 Capping Pores in Complex with Gtp
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of Cryoem Structure of the Chikungunya Virus NSP1 Capping Pores in Complex with Gtp within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Zn601
b:152.9
occ:1.00
|
OE1
|
G:GLU129
|
2.1
|
104.6
|
1.0
|
|
CB
|
G:CYS134
|
2.2
|
102.7
|
1.0
|
|
NE2
|
G:HIS79
|
2.3
|
89.7
|
1.0
|
|
SG
|
G:CYS134
|
2.3
|
103.4
|
1.0
|
|
SG
|
G:CYS141
|
2.3
|
72.6
|
1.0
|
|
CE1
|
G:HIS79
|
2.9
|
90.0
|
1.0
|
|
CD
|
G:GLU129
|
3.0
|
104.7
|
1.0
|
|
OE2
|
G:GLU129
|
3.3
|
104.4
|
1.0
|
|
CD2
|
G:HIS79
|
3.5
|
89.4
|
1.0
|
|
CA
|
G:CYS134
|
3.6
|
103.2
|
1.0
|
|
CB
|
G:CYS141
|
3.7
|
70.8
|
1.0
|
|
ND1
|
G:HIS79
|
4.1
|
89.0
|
1.0
|
|
CB
|
G:GLN143
|
4.3
|
87.4
|
1.0
|
|
CA
|
G:CYS141
|
4.3
|
71.6
|
1.0
|
|
CG
|
G:GLU129
|
4.4
|
104.9
|
1.0
|
|
N
|
G:CYS134
|
4.4
|
103.4
|
1.0
|
|
CB
|
G:VAL81
|
4.4
|
62.2
|
1.0
|
|
CG
|
G:HIS79
|
4.5
|
88.8
|
1.0
|
|
O
|
G:PHE133
|
4.5
|
103.5
|
1.0
|
|
C
|
G:CYS134
|
4.6
|
103.1
|
1.0
|
|
CB
|
G:GLU129
|
4.6
|
104.7
|
1.0
|
|
CA
|
G:GLU129
|
4.7
|
104.5
|
1.0
|
|
N
|
G:ARG142
|
4.7
|
101.5
|
1.0
|
|
N
|
G:GLN143
|
4.7
|
87.0
|
1.0
|
|
C
|
G:PHE133
|
4.8
|
103.7
|
1.0
|
|
CG2
|
G:VAL81
|
4.8
|
62.1
|
1.0
|
|
N
|
G:LEU135
|
4.9
|
97.4
|
1.0
|
|
Zinc binding site 5 out
of 12 in 8aov
Go back to
Zinc Binding Sites List in 8aov
Zinc binding site 5 out
of 12 in the Cryoem Structure of the Chikungunya Virus NSP1 Capping Pores in Complex with Gtp
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 5 of Cryoem Structure of the Chikungunya Virus NSP1 Capping Pores in Complex with Gtp within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Zn601
b:155.9
occ:1.00
|
CB
|
I:CYS134
|
1.9
|
105.4
|
1.0
|
|
CE1
|
I:HIS79
|
2.2
|
83.5
|
1.0
|
|
SG
|
I:CYS141
|
2.3
|
74.7
|
1.0
|
|
SG
|
I:CYS134
|
2.3
|
105.8
|
1.0
|
|
NE2
|
I:HIS79
|
2.3
|
83.0
|
1.0
|
|
OE1
|
I:GLU129
|
2.8
|
110.0
|
1.0
|
|
CA
|
I:CYS134
|
3.4
|
104.5
|
1.0
|
|
ND1
|
I:HIS79
|
3.5
|
83.6
|
1.0
|
|
CD2
|
I:HIS79
|
3.7
|
82.4
|
1.0
|
|
CD
|
I:GLU129
|
3.7
|
110.8
|
1.0
|
|
CB
|
I:CYS141
|
3.8
|
74.0
|
1.0
|
|
N
|
I:CYS134
|
4.0
|
104.2
|
1.0
|
|
OE2
|
I:GLU129
|
4.0
|
110.7
|
1.0
|
|
CB
|
I:VAL81
|
4.1
|
64.5
|
1.0
|
|
C
|
I:CYS134
|
4.2
|
104.0
|
1.0
|
|
CG
|
I:HIS79
|
4.3
|
83.0
|
1.0
|
|
CB
|
I:GLN143
|
4.4
|
74.4
|
1.0
|
|
O
|
I:PHE133
|
4.4
|
92.7
|
1.0
|
|
C
|
I:PHE133
|
4.5
|
92.8
|
1.0
|
|
CA
|
I:CYS141
|
4.6
|
74.6
|
1.0
|
|
CG2
|
I:VAL81
|
4.6
|
64.5
|
1.0
|
|
O
|
I:CYS134
|
4.7
|
104.1
|
1.0
|
|
N
|
I:LEU135
|
4.8
|
88.2
|
1.0
|
|
CA
|
I:VAL81
|
4.9
|
64.4
|
1.0
|
|
CA
|
I:GLU129
|
4.9
|
110.2
|
1.0
|
|
CG1
|
I:VAL81
|
4.9
|
63.1
|
1.0
|
|
CG
|
I:GLU129
|
5.0
|
110.8
|
1.0
|
|
Zinc binding site 6 out
of 12 in 8aov
Go back to
Zinc Binding Sites List in 8aov
Zinc binding site 6 out
of 12 in the Cryoem Structure of the Chikungunya Virus NSP1 Capping Pores in Complex with Gtp
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 6 of Cryoem Structure of the Chikungunya Virus NSP1 Capping Pores in Complex with Gtp within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
K:Zn601
b:157.1
occ:1.00
|
OE1
|
K:GLU129
|
2.1
|
114.8
|
1.0
|
|
CB
|
K:CYS134
|
2.2
|
102.7
|
1.0
|
|
NE2
|
K:HIS79
|
2.3
|
85.6
|
1.0
|
|
SG
|
K:CYS141
|
2.3
|
88.8
|
1.0
|
|
SG
|
K:CYS134
|
2.3
|
102.8
|
1.0
|
|
CE1
|
K:HIS79
|
2.8
|
85.5
|
1.0
|
|
CD
|
K:GLU129
|
3.1
|
115.0
|
1.0
|
|
OE2
|
K:GLU129
|
3.4
|
113.9
|
1.0
|
|
CD2
|
K:HIS79
|
3.6
|
85.0
|
1.0
|
|
CA
|
K:CYS134
|
3.6
|
102.7
|
1.0
|
|
CB
|
K:CYS141
|
3.8
|
88.7
|
1.0
|
|
CB
|
K:GLN143
|
4.1
|
82.2
|
1.0
|
|
ND1
|
K:HIS79
|
4.1
|
84.5
|
1.0
|
|
CG
|
K:GLU129
|
4.3
|
114.8
|
1.0
|
|
O
|
K:PHE133
|
4.4
|
98.1
|
1.0
|
|
CA
|
K:CYS141
|
4.4
|
89.0
|
1.0
|
|
CA
|
K:GLU129
|
4.4
|
114.3
|
1.0
|
|
N
|
K:CYS134
|
4.4
|
103.0
|
1.0
|
|
CG
|
K:HIS79
|
4.5
|
84.2
|
1.0
|
|
CB
|
K:GLU129
|
4.5
|
114.8
|
1.0
|
|
C
|
K:CYS134
|
4.6
|
102.2
|
1.0
|
|
CB
|
K:VAL81
|
4.6
|
62.0
|
1.0
|
|
N
|
K:GLN143
|
4.6
|
82.9
|
1.0
|
|
N
|
K:ARG142
|
4.7
|
99.5
|
1.0
|
|
C
|
K:PHE133
|
4.7
|
98.3
|
1.0
|
|
O
|
K:THR128
|
4.8
|
84.5
|
1.0
|
|
CG
|
K:GLN143
|
4.9
|
83.1
|
1.0
|
|
N
|
K:LEU135
|
5.0
|
84.1
|
1.0
|
|
C
|
K:GLU129
|
5.0
|
113.6
|
1.0
|
|
CA
|
K:GLN143
|
5.0
|
81.9
|
1.0
|
|
Zinc binding site 7 out
of 12 in 8aov
Go back to
Zinc Binding Sites List in 8aov
Zinc binding site 7 out
of 12 in the Cryoem Structure of the Chikungunya Virus NSP1 Capping Pores in Complex with Gtp
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 7 of Cryoem Structure of the Chikungunya Virus NSP1 Capping Pores in Complex with Gtp within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
M:Zn601
b:154.2
occ:1.00
|
CB
|
M:CYS134
|
2.1
|
102.0
|
1.0
|
|
OE1
|
M:GLU129
|
2.1
|
108.6
|
1.0
|
|
NE2
|
M:HIS79
|
2.3
|
87.8
|
1.0
|
|
SG
|
M:CYS134
|
2.3
|
102.1
|
1.0
|
|
SG
|
M:CYS141
|
2.3
|
77.1
|
1.0
|
|
CE1
|
M:HIS79
|
2.9
|
88.2
|
1.0
|
|
CD
|
M:GLU129
|
3.1
|
108.8
|
1.0
|
|
CD2
|
M:HIS79
|
3.5
|
87.6
|
1.0
|
|
CA
|
M:CYS134
|
3.5
|
102.2
|
1.0
|
|
OE2
|
M:GLU129
|
3.6
|
108.4
|
1.0
|
|
CB
|
M:CYS141
|
3.7
|
75.8
|
1.0
|
|
ND1
|
M:HIS79
|
4.2
|
87.0
|
1.0
|
|
CB
|
M:GLN143
|
4.3
|
83.3
|
1.0
|
|
CA
|
M:CYS141
|
4.3
|
76.7
|
1.0
|
|
N
|
M:CYS134
|
4.4
|
102.1
|
1.0
|
|
CG
|
M:GLU129
|
4.4
|
108.9
|
1.0
|
|
O
|
M:PHE133
|
4.4
|
100.2
|
1.0
|
|
CA
|
M:GLU129
|
4.5
|
108.4
|
1.0
|
|
CG
|
M:HIS79
|
4.5
|
86.9
|
1.0
|
|
C
|
M:CYS134
|
4.5
|
102.2
|
1.0
|
|
CB
|
M:GLU129
|
4.5
|
108.7
|
1.0
|
|
CB
|
M:VAL81
|
4.6
|
58.6
|
1.0
|
|
N
|
M:ARG142
|
4.6
|
97.8
|
1.0
|
|
N
|
M:GLN143
|
4.7
|
83.4
|
1.0
|
|
C
|
M:PHE133
|
4.7
|
100.3
|
1.0
|
|
N
|
M:LEU135
|
4.9
|
99.4
|
1.0
|
|
O
|
M:THR128
|
5.0
|
98.4
|
1.0
|
|
CG2
|
M:VAL81
|
5.0
|
59.2
|
1.0
|
|
ND1
|
M:HIS136
|
5.0
|
100.5
|
1.0
|
|
C
|
M:CYS141
|
5.0
|
78.0
|
1.0
|
|
Zinc binding site 8 out
of 12 in 8aov
Go back to
Zinc Binding Sites List in 8aov
Zinc binding site 8 out
of 12 in the Cryoem Structure of the Chikungunya Virus NSP1 Capping Pores in Complex with Gtp
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 8 of Cryoem Structure of the Chikungunya Virus NSP1 Capping Pores in Complex with Gtp within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
O:Zn601
b:154.2
occ:1.00
|
CB
|
O:CYS134
|
1.9
|
99.3
|
1.0
|
|
CE1
|
O:HIS79
|
2.3
|
81.9
|
1.0
|
|
SG
|
O:CYS141
|
2.3
|
71.8
|
1.0
|
|
SG
|
O:CYS134
|
2.3
|
100.2
|
1.0
|
|
NE2
|
O:HIS79
|
2.3
|
81.8
|
1.0
|
|
OE1
|
O:GLU129
|
2.7
|
107.5
|
1.0
|
|
CA
|
O:CYS134
|
3.4
|
98.5
|
1.0
|
|
ND1
|
O:HIS79
|
3.6
|
81.5
|
1.0
|
|
CD2
|
O:HIS79
|
3.7
|
81.5
|
1.0
|
|
CD
|
O:GLU129
|
3.7
|
108.2
|
1.0
|
|
CB
|
O:CYS141
|
3.8
|
71.5
|
1.0
|
|
N
|
O:CYS134
|
4.0
|
98.8
|
1.0
|
|
OE2
|
O:GLU129
|
4.0
|
107.8
|
1.0
|
|
CB
|
O:VAL81
|
4.2
|
62.2
|
1.0
|
|
C
|
O:CYS134
|
4.3
|
98.1
|
1.0
|
|
CG
|
O:HIS79
|
4.3
|
81.5
|
1.0
|
|
CB
|
O:GLN143
|
4.3
|
80.5
|
1.0
|
|
O
|
O:PHE133
|
4.4
|
92.3
|
1.0
|
|
C
|
O:PHE133
|
4.5
|
92.6
|
1.0
|
|
CA
|
O:CYS141
|
4.6
|
72.5
|
1.0
|
|
CG2
|
O:VAL81
|
4.7
|
62.1
|
1.0
|
|
N
|
O:LEU135
|
4.8
|
87.9
|
1.0
|
|
CA
|
O:GLU129
|
4.8
|
107.7
|
1.0
|
|
O
|
O:CYS134
|
4.9
|
98.5
|
1.0
|
|
N
|
O:GLN143
|
4.9
|
79.6
|
1.0
|
|
CG
|
O:GLU129
|
4.9
|
108.1
|
1.0
|
|
Zinc binding site 9 out
of 12 in 8aov
Go back to
Zinc Binding Sites List in 8aov
Zinc binding site 9 out
of 12 in the Cryoem Structure of the Chikungunya Virus NSP1 Capping Pores in Complex with Gtp
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 9 of Cryoem Structure of the Chikungunya Virus NSP1 Capping Pores in Complex with Gtp within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
Q:Zn601
b:164.5
occ:1.00
|
CB
|
Q:CYS134
|
2.1
|
101.2
|
1.0
|
|
OE1
|
Q:GLU129
|
2.1
|
109.8
|
1.0
|
|
NE2
|
Q:HIS79
|
2.3
|
82.1
|
1.0
|
|
SG
|
Q:CYS134
|
2.3
|
101.0
|
1.0
|
|
SG
|
Q:CYS141
|
2.3
|
86.8
|
1.0
|
|
CE1
|
Q:HIS79
|
2.9
|
82.6
|
1.0
|
|
CD
|
Q:GLU129
|
3.2
|
110.1
|
1.0
|
|
CD2
|
Q:HIS79
|
3.5
|
81.9
|
1.0
|
|
CA
|
Q:CYS134
|
3.6
|
101.0
|
1.0
|
|
OE2
|
Q:GLU129
|
3.6
|
109.1
|
1.0
|
|
CB
|
Q:CYS141
|
3.8
|
86.0
|
1.0
|
|
CB
|
Q:GLN143
|
4.1
|
84.5
|
1.0
|
|
ND1
|
Q:HIS79
|
4.1
|
81.6
|
1.0
|
|
N
|
Q:CYS134
|
4.4
|
101.0
|
1.0
|
|
CG
|
Q:GLU129
|
4.4
|
110.0
|
1.0
|
|
CA
|
Q:CYS141
|
4.4
|
86.4
|
1.0
|
|
O
|
Q:PHE133
|
4.5
|
94.5
|
1.0
|
|
CG
|
Q:HIS79
|
4.5
|
81.2
|
1.0
|
|
CA
|
Q:GLU129
|
4.5
|
109.5
|
1.0
|
|
CB
|
Q:GLU129
|
4.5
|
109.8
|
1.0
|
|
C
|
Q:CYS134
|
4.6
|
100.6
|
1.0
|
|
CB
|
Q:VAL81
|
4.6
|
63.3
|
1.0
|
|
N
|
Q:GLN143
|
4.6
|
84.8
|
1.0
|
|
N
|
Q:ARG142
|
4.7
|
95.2
|
1.0
|
|
C
|
Q:PHE133
|
4.7
|
94.6
|
1.0
|
|
CG
|
Q:GLN143
|
5.0
|
85.3
|
1.0
|
|
CG2
|
Q:VAL81
|
5.0
|
63.2
|
1.0
|
|
N
|
Q:LEU135
|
5.0
|
86.2
|
1.0
|
|
Zinc binding site 10 out
of 12 in 8aov
Go back to
Zinc Binding Sites List in 8aov
Zinc binding site 10 out
of 12 in the Cryoem Structure of the Chikungunya Virus NSP1 Capping Pores in Complex with Gtp
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 10 of Cryoem Structure of the Chikungunya Virus NSP1 Capping Pores in Complex with Gtp within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
S:Zn601
b:158.0
occ:1.00
|
CB
|
S:CYS134
|
1.9
|
113.0
|
1.0
|
|
CE1
|
S:HIS79
|
2.2
|
91.7
|
1.0
|
|
SG
|
S:CYS134
|
2.3
|
113.9
|
1.0
|
|
SG
|
S:CYS141
|
2.3
|
77.9
|
1.0
|
|
NE2
|
S:HIS79
|
2.3
|
91.6
|
1.0
|
|
OE1
|
S:GLU129
|
2.8
|
103.6
|
1.0
|
|
CA
|
S:CYS134
|
3.4
|
113.2
|
1.0
|
|
ND1
|
S:HIS79
|
3.5
|
91.1
|
1.0
|
|
CD2
|
S:HIS79
|
3.7
|
90.5
|
1.0
|
|
CD
|
S:GLU129
|
3.8
|
104.1
|
1.0
|
|
CB
|
S:CYS141
|
3.9
|
76.5
|
1.0
|
|
N
|
S:CYS134
|
4.1
|
113.0
|
1.0
|
|
OE2
|
S:GLU129
|
4.1
|
104.0
|
1.0
|
|
CB
|
S:VAL81
|
4.2
|
61.7
|
1.0
|
|
CG
|
S:HIS79
|
4.2
|
90.6
|
1.0
|
|
CB
|
S:GLN143
|
4.3
|
83.5
|
1.0
|
|
O
|
S:PHE133
|
4.3
|
106.6
|
1.0
|
|
C
|
S:CYS134
|
4.4
|
112.8
|
1.0
|
|
C
|
S:PHE133
|
4.5
|
106.9
|
1.0
|
|
CA
|
S:CYS141
|
4.6
|
77.1
|
1.0
|
|
CG2
|
S:VAL81
|
4.7
|
61.8
|
1.0
|
|
CA
|
S:GLU129
|
4.8
|
104.2
|
1.0
|
|
N
|
S:LEU135
|
4.9
|
103.1
|
1.0
|
|
N
|
S:GLN143
|
5.0
|
83.4
|
1.0
|
|
CG
|
S:GLU129
|
5.0
|
104.4
|
1.0
|
|
CB
|
S:GLU129
|
5.0
|
104.4
|
1.0
|
|
CA
|
S:VAL81
|
5.0
|
63.8
|
1.0
|
|
Reference:
R.Jones,
M.Hons,
N.Rabah,
N.Zamarreno,
R.Arranz,
J.Reguera.
Structural Basis and Dynamics of Chikungunya Alphavirus Rna Capping By NSP1 Capping Pores. Proc.Natl.Acad.Sci.Usa V. 120 34120 2023.
ISSN: ESSN 1091-6490
PubMed: 36913573
DOI: 10.1073/PNAS.2213934120
Page generated: Wed Oct 30 17:55:56 2024
|
