Zinc in PDB 8acp: Rna Polymerase at U-Rich Pause Bound to Regulatory Rna Putl - Inactive, Open Clamp State

All present enzymatic activity of Rna Polymerase at U-Rich Pause Bound to Regulatory Rna Putl - Inactive, Open Clamp State:
2.7.7.6;

The structure of Rna Polymerase at U-Rich Pause Bound to Regulatory Rna Putl - Inactive, Open Clamp State also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Zinc atom in the Rna Polymerase at U-Rich Pause Bound to Regulatory Rna Putl - Inactive, Open Clamp State (pdb code 8acp). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Rna Polymerase at U-Rich Pause Bound to Regulatory Rna Putl - Inactive, Open Clamp State, PDB code: 8acp:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Rna Polymerase at U-Rich Pause Bound to Regulatory Rna Putl - Inactive, Open Clamp State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Rna Polymerase at U-Rich Pause Bound to Regulatory Rna Putl - Inactive, Open Clamp State within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn1502 b:378.9 occ:1.00 SG D:CYS88 2.3 322.0 1.0 SG D:CYS72 2.3 350.0 1.0 SG D:CYS70 2.3 339.0 1.0 SG D:CYS85 2.3 336.2 1.0 CB D:CYS70 2.7 339.0 1.0 CB D:CYS85 3.1 336.2 1.0 CB D:CYS88 3.7 322.0 1.0 N D:CYS88 3.8 322.0 1.0 CB D:CYS72 4.0 350.0 1.0 CA D:CYS70 4.1 339.0 1.0 N D:CYS72 4.1 350.0 1.0 N D:LYS74 4.3 350.4 1.0 C D:CYS70 4.3 339.0 1.0 CA D:CYS88 4.3 322.0 1.0 N D:GLY73 4.3 346.0 1.0 N D:LEU71 4.3 329.7 1.0 CB D:LYS74 4.4 350.4 1.0 O D:CYS88 4.4 322.0 1.0 CA D:CYS72 4.4 350.0 1.0 CG D:LYS74 4.4 350.4 1.0 CB D:LYS87 4.4 342.5 1.0 CA D:CYS85 4.6 336.2 1.0 C D:CYS72 4.6 350.0 1.0 C D:LYS87 4.8 342.5 1.0 C D:CYS88 4.9 322.0 1.0 CA D:LYS74 4.9 350.4 1.0 O D:CYS70 5.0 339.0 1.0 N D:LYS87 5.0 342.5 1.0 N D:CYS70 5.0 339.0 1.0 CA D:LYS87 5.0 342.5 1.0

Zinc binding site 2 out of 2 in the Rna Polymerase at U-Rich Pause Bound to Regulatory Rna Putl - Inactive, Open Clamp State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Rna Polymerase at U-Rich Pause Bound to Regulatory Rna Putl - Inactive, Open Clamp State within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn1503 b:209.0 occ:1.00 SG D:CYS898 2.3 150.5 1.0 SG D:CYS814 2.3 174.1 1.0 SG D:CYS895 2.3 156.5 1.0 SG D:CYS888 2.3 155.4 1.0 CB D:CYS895 2.7 156.5 1.0 CB D:CYS814 3.3 174.1 1.0 CB D:CYS898 3.5 150.5 1.0 CB D:CYS888 3.6 155.4 1.0 CG2 D:THR890 3.7 159.2 1.0 N D:CYS895 3.7 156.5 1.0 N D:CYS814 3.8 174.1 1.0 CA D:CYS895 3.8 156.5 1.0 CA D:CYS814 4.1 174.1 1.0 CA D:CYS888 4.2 155.4 1.0 CG2 D:THR816 4.2 172.2 1.0 NH2 D:ARG883 4.3 171.6 1.0 N D:ASP889 4.7 180.2 1.0 OG1 D:THR890 4.8 159.2 1.0 OD1 D:ASP889 4.8 180.2 1.0 C D:CYS888 4.8 155.4 1.0 CA D:CYS898 4.8 150.5 1.0 C D:ASP813 4.8 172.4 1.0 CB D:THR890 4.9 159.2 1.0 C D:CYS895 4.9 156.5 1.0 C D:VAL894 4.9 141.6 1.0 CB D:THR816 4.9 172.2 1.0 N D:CYS898 5.0 150.5 1.0 C D:CYS814 5.0 174.1 1.0

S.Dey, C.Batisse, J.Shukla, M.W.Webster, M.Takacs, C.Saint-Andre, A.Weixlbaumer. Structural Insights Into Rna-Mediated Transcription Regulation in Bacteria. Mol.Cell V. 82 3885 2022.
ISSN: ISSN 1097-2765
PubMed: 36220101
DOI: 10.1016/J.MOLCEL.2022.09.020