Zinc in PDB 7z8m: The Pointed End Complex of Dynactin Bound to BICDR1

Other elements in 7z8m:

The structure of The Pointed End Complex of Dynactin Bound to BICDR1 also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the The Pointed End Complex of Dynactin Bound to BICDR1 (pdb code 7z8m). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the The Pointed End Complex of Dynactin Bound to BICDR1, PDB code: 7z8m:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 7z8m

Go back to Zinc Binding Sites List in 7z8m
Zinc binding site 1 out of 3 in the The Pointed End Complex of Dynactin Bound to BICDR1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Pointed End Complex of Dynactin Bound to BICDR1 within 5.0Å range:
probe atom residue distance (Å) B Occ
Y:Zn501

b:112.9
occ:1.00
 SG Y:CYS287 2.3 86.0 1.0
SG Y:CYS33 2.3 90.6 1.0
SG Y:CYS284 2.3 82.7 1.0
SG Y:CYS30 2.3 81.6 1.0
CB Y:CYS284 3.2 74.1 1.0
CB Y:CYS33 3.6 80.9 1.0
CB Y:CYS287 3.6 77.1 1.0
CB Y:CYS30 3.6 73.7 1.0
O Y:CYS287 3.9 81.0 1.0
N Y:CYS287 4.0 76.5 1.0
N Y:CYS33 4.0 81.0 1.0
CA Y:CYS287 4.2 76.2 1.0
CA Y:CYS33 4.4 79.4 1.0
C Y:CYS287 4.5 78.2 1.0
NE Y:ARG37 4.6 77.7 1.0
CB Y:TYR32 4.6 76.7 1.0
CA Y:CYS284 4.7 70.2 1.0
C Y:TYR32 4.9 78.6 1.0
NH2 Y:ARG37 4.9 78.7 1.0

Zinc binding site 2 out of 3 in 7z8m

Go back to Zinc Binding Sites List in 7z8m
Zinc binding site 2 out of 3 in the The Pointed End Complex of Dynactin Bound to BICDR1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Pointed End Complex of Dynactin Bound to BICDR1 within 5.0Å range:
probe atom residue distance (Å) B Occ
Y:Zn502

b:85.6
occ:1.00
 SG Y:CYS73 2.3 60.3 1.0
SG Y:CYS54 2.3 58.2 1.0
SG Y:CYS51 2.3 58.8 1.0
SG Y:CYS70 2.3 61.6 1.0
CB Y:CYS73 3.2 46.3 1.0
CB Y:CYS70 3.3 45.6 1.0
CB Y:CYS51 3.4 48.7 1.0
CB Y:CYS54 3.7 57.5 1.0
N Y:CYS73 3.7 46.8 1.0
N Y:CYS54 3.7 52.4 1.0
CA Y:CYS73 4.1 44.6 1.0
O Y:CYS54 4.2 56.2 1.0
CA Y:CYS54 4.2 53.8 1.0
OG Y:SER53 4.3 53.7 1.0
CB Y:SER53 4.4 50.9 1.0
CA Y:CYS70 4.7 44.1 1.0
C Y:CYS54 4.7 52.4 1.0
CA Y:CYS51 4.8 47.8 1.0
C Y:SER53 4.8 54.1 1.0
CB Y:ASN72 4.8 50.3 1.0
C Y:ASN72 4.8 47.5 1.0
N Y:ASN72 4.9 46.4 1.0
N Y:SER53 4.9 49.8 1.0
CA Y:SER53 5.0 50.8 1.0

Zinc binding site 3 out of 3 in 7z8m

Go back to Zinc Binding Sites List in 7z8m
Zinc binding site 3 out of 3 in the The Pointed End Complex of Dynactin Bound to BICDR1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of The Pointed End Complex of Dynactin Bound to BICDR1 within 5.0Å range:
probe atom residue distance (Å) B Occ
Y:Zn503

b:66.9
occ:1.00
 SG Y:CYS111 2.3 49.0 1.0
SG Y:CYS79 2.3 53.5 1.0
SG Y:CYS114 2.3 54.0 1.0
SG Y:CYS76 2.3 52.7 1.0
CB Y:CYS111 3.2 43.2 1.0
CB Y:CYS76 3.4 45.4 1.0
N Y:CYS79 3.7 47.8 1.0
CB Y:CYS114 3.7 44.1 1.0
O Y:CYS79 3.8 53.1 1.0
CB Y:CYS79 3.8 48.9 1.0
O Y:CYS114 3.9 47.3 1.0
N Y:CYS114 3.9 45.1 1.0
CA Y:CYS79 4.2 47.9 1.0
CA Y:CYS114 4.2 44.3 1.0
C Y:CYS114 4.4 42.2 1.0
C Y:CYS79 4.4 49.0 1.0
CB Y:TRP116 4.5 42.9 1.0
C Y:GLY78 4.6 50.0 1.0
CA Y:CYS111 4.6 41.3 1.0
CA Y:GLY78 4.8 48.4 1.0
CA Y:CYS76 4.8 41.9 1.0
N Y:GLY78 4.9 47.8 1.0
CB Y:HIS81 5.0 45.0 1.0
CB Y:PHE113 5.0 46.0 1.0

Reference:

S.Chaaban, A.P.Carter. Structure of Dynein-Dynactin on Microtubules Shows Tandem Adaptor Binding. Nature V. 610 212 2022.
ISSN: ESSN 1476-4687
PubMed: 36071160
DOI: 10.1038/S41586-022-05186-Y
Page generated: Sat Apr 8 06:34:38 2023

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy