Atomistry » Zinc » PDB 7z16-7zdm » 7z8m
Atomistry »
  Zinc »
    PDB 7z16-7zdm »
      7z8m »

Zinc in PDB 7z8m: The Pointed End Complex of Dynactin Bound to BICDR1

Other elements in 7z8m:

The structure of The Pointed End Complex of Dynactin Bound to BICDR1 also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the The Pointed End Complex of Dynactin Bound to BICDR1 (pdb code 7z8m). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the The Pointed End Complex of Dynactin Bound to BICDR1, PDB code: 7z8m:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 7z8m

Go back to Zinc Binding Sites List in 7z8m
Zinc binding site 1 out of 3 in the The Pointed End Complex of Dynactin Bound to BICDR1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Pointed End Complex of Dynactin Bound to BICDR1 within 5.0Å range:
probe atom residue distance (Å) B Occ
Y:Zn501

b:112.9
occ:1.00
SG Y:CYS287 2.3 86.0 1.0
SG Y:CYS33 2.3 90.6 1.0
SG Y:CYS284 2.3 82.7 1.0
SG Y:CYS30 2.3 81.6 1.0
CB Y:CYS284 3.2 74.1 1.0
CB Y:CYS33 3.6 80.9 1.0
CB Y:CYS287 3.6 77.1 1.0
CB Y:CYS30 3.6 73.7 1.0
O Y:CYS287 3.9 81.0 1.0
N Y:CYS287 4.0 76.5 1.0
N Y:CYS33 4.0 81.0 1.0
CA Y:CYS287 4.2 76.2 1.0
CA Y:CYS33 4.4 79.4 1.0
C Y:CYS287 4.5 78.2 1.0
NE Y:ARG37 4.6 77.7 1.0
CB Y:TYR32 4.6 76.7 1.0
CA Y:CYS284 4.7 70.2 1.0
C Y:TYR32 4.9 78.6 1.0
NH2 Y:ARG37 4.9 78.7 1.0

Zinc binding site 2 out of 3 in 7z8m

Go back to Zinc Binding Sites List in 7z8m
Zinc binding site 2 out of 3 in the The Pointed End Complex of Dynactin Bound to BICDR1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Pointed End Complex of Dynactin Bound to BICDR1 within 5.0Å range:
probe atom residue distance (Å) B Occ
Y:Zn502

b:85.6
occ:1.00
SG Y:CYS73 2.3 60.3 1.0
SG Y:CYS54 2.3 58.2 1.0
SG Y:CYS51 2.3 58.8 1.0
SG Y:CYS70 2.3 61.6 1.0
CB Y:CYS73 3.2 46.3 1.0
CB Y:CYS70 3.3 45.6 1.0
CB Y:CYS51 3.4 48.7 1.0
CB Y:CYS54 3.7 57.5 1.0
N Y:CYS73 3.7 46.8 1.0
N Y:CYS54 3.7 52.4 1.0
CA Y:CYS73 4.1 44.6 1.0
O Y:CYS54 4.2 56.2 1.0
CA Y:CYS54 4.2 53.8 1.0
OG Y:SER53 4.3 53.7 1.0
CB Y:SER53 4.4 50.9 1.0
CA Y:CYS70 4.7 44.1 1.0
C Y:CYS54 4.7 52.4 1.0
CA Y:CYS51 4.8 47.8 1.0
C Y:SER53 4.8 54.1 1.0
CB Y:ASN72 4.8 50.3 1.0
C Y:ASN72 4.8 47.5 1.0
N Y:ASN72 4.9 46.4 1.0
N Y:SER53 4.9 49.8 1.0
CA Y:SER53 5.0 50.8 1.0

Zinc binding site 3 out of 3 in 7z8m

Go back to Zinc Binding Sites List in 7z8m
Zinc binding site 3 out of 3 in the The Pointed End Complex of Dynactin Bound to BICDR1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of The Pointed End Complex of Dynactin Bound to BICDR1 within 5.0Å range:
probe atom residue distance (Å) B Occ
Y:Zn503

b:66.9
occ:1.00
SG Y:CYS111 2.3 49.0 1.0
SG Y:CYS79 2.3 53.5 1.0
SG Y:CYS114 2.3 54.0 1.0
SG Y:CYS76 2.3 52.7 1.0
CB Y:CYS111 3.2 43.2 1.0
CB Y:CYS76 3.4 45.4 1.0
N Y:CYS79 3.7 47.8 1.0
CB Y:CYS114 3.7 44.1 1.0
O Y:CYS79 3.8 53.1 1.0
CB Y:CYS79 3.8 48.9 1.0
O Y:CYS114 3.9 47.3 1.0
N Y:CYS114 3.9 45.1 1.0
CA Y:CYS79 4.2 47.9 1.0
CA Y:CYS114 4.2 44.3 1.0
C Y:CYS114 4.4 42.2 1.0
C Y:CYS79 4.4 49.0 1.0
CB Y:TRP116 4.5 42.9 1.0
C Y:GLY78 4.6 50.0 1.0
CA Y:CYS111 4.6 41.3 1.0
CA Y:GLY78 4.8 48.4 1.0
CA Y:CYS76 4.8 41.9 1.0
N Y:GLY78 4.9 47.8 1.0
CB Y:HIS81 5.0 45.0 1.0
CB Y:PHE113 5.0 46.0 1.0

Reference:

S.Chaaban, A.P.Carter. Structure of Dynein-Dynactin on Microtubules Shows Tandem Adaptor Binding. Nature V. 610 212 2022.
ISSN: ESSN 1476-4687
PubMed: 36071160
DOI: 10.1038/S41586-022-05186-Y
Page generated: Wed Oct 30 16:19:29 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy