Zinc in PDB 7z6e: Structure of the C1-pH-Cnh Regulatory Module of MRCK1

Enzymatic activity of Structure of the C1-pH-Cnh Regulatory Module of MRCK1

All present enzymatic activity of Structure of the C1-pH-Cnh Regulatory Module of MRCK1:
2.7.11.1;

Protein crystallography data

The structure of Structure of the C1-pH-Cnh Regulatory Module of MRCK1, PDB code: 7z6e was solved by L.Truebestein, T.A.Leonard, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.60 / 2.14
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 69.142, 97.467, 131.413, 81.38, 77.77, 80.39
R / Rfree (%) 19.4 / 24.5

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of the C1-pH-Cnh Regulatory Module of MRCK1 (pdb code 7z6e). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 10 binding sites of Zinc where determined in the Structure of the C1-pH-Cnh Regulatory Module of MRCK1, PDB code: 7z6e:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 10 in 7z6e

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Zinc binding site 1 out of 10 in the Structure of the C1-pH-Cnh Regulatory Module of MRCK1


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Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the C1-pH-Cnh Regulatory Module of MRCK1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1601

b:40.9
occ:1.00
 ND1 A:HIS958 2.1 62.6 1.0
SG A:CYS991 2.3 44.2 1.0
SG A:CYS988 2.3 42.4 1.0
SG A:CYS1007 2.4 53.7 1.0
CE1 A:HIS958 2.9 66.3 1.0
CG A:HIS958 3.2 62.0 1.0
CB A:CYS988 3.3 42.1 1.0
CB A:CYS991 3.4 48.3 1.0
CB A:CYS1007 3.6 69.8 1.0
CB A:HIS958 3.7 57.3 1.0
CA A:HIS958 3.8 61.1 1.0
O A:CYS1007 3.8 73.9 1.0
N A:CYS991 3.9 47.1 1.0
CA A:CYS1007 3.9 74.9 1.0
C A:CYS1007 4.0 73.3 1.0
NE2 A:HIS958 4.0 70.5 1.0
CD2 A:HIS958 4.2 68.1 1.0
CB A:SER990 4.2 50.7 1.0
CA A:CYS991 4.2 47.8 1.0
C A:SER990 4.6 50.0 1.0
N A:HIS958 4.6 64.5 1.0
N A:ASN959 4.7 57.2 1.0
CA A:CYS988 4.7 44.5 1.0
CA A:SER990 4.8 49.4 1.0
C A:HIS958 4.8 60.6 1.0
N A:PRO1008 4.9 69.6 1.0
N A:SER990 5.0 45.9 1.0
CB A:TYR993 5.0 42.7 1.0

Zinc binding site 2 out of 10 in 7z6e

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Zinc binding site 2 out of 10 in the Structure of the C1-pH-Cnh Regulatory Module of MRCK1


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Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of the C1-pH-Cnh Regulatory Module of MRCK1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1602

b:40.4
occ:1.00
 ND1 A:HIS996 2.1 40.6 1.0
SG A:CYS999 2.2 37.8 1.0
SG A:CYS974 2.4 39.2 1.0
SG A:CYS971 2.4 37.9 1.0
CB A:CYS971 3.0 33.9 1.0
CE1 A:HIS996 3.1 35.9 1.0
CG A:HIS996 3.1 37.3 1.0
CB A:CYS999 3.3 45.1 1.0
CB A:CYS974 3.4 36.5 1.0
CB A:HIS996 3.5 34.6 1.0
N A:CYS974 3.8 39.9 1.0
N A:HIS996 4.0 34.6 1.0
CA A:CYS974 4.2 39.2 1.0
NE2 A:HIS996 4.2 37.7 1.0
CD2 A:HIS996 4.2 37.3 1.0
CA A:HIS996 4.3 37.9 1.0
CA A:CYS971 4.5 34.3 1.0
CA A:CYS999 4.7 49.7 1.0
CB A:HIS973 4.8 44.9 1.0
C A:HIS973 4.8 39.5 1.0
C A:CYS974 4.9 37.7 1.0
N A:THR975 5.0 33.6 1.0

Zinc binding site 3 out of 10 in 7z6e

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Zinc binding site 3 out of 10 in the Structure of the C1-pH-Cnh Regulatory Module of MRCK1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structure of the C1-pH-Cnh Regulatory Module of MRCK1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn1601

b:53.4
occ:1.00
 ND1 B:HIS958 2.0 66.5 1.0
SG B:CYS988 2.3 53.4 1.0
SG B:CYS991 2.3 54.2 1.0
SG B:CYS1007 2.4 60.9 1.0
CE1 B:HIS958 2.7 68.5 1.0
CB B:CYS988 3.2 49.7 1.0
CG B:HIS958 3.2 65.2 1.0
CB B:CYS1007 3.3 71.7 1.0
CB B:CYS991 3.4 57.1 1.0
CB B:HIS958 3.8 60.5 1.0
OG B:SER990 3.9 60.5 1.0
CA B:HIS958 3.9 64.0 1.0
NE2 B:HIS958 3.9 75.2 1.0
N B:CYS991 4.0 56.1 1.0
CD2 B:HIS958 4.2 70.3 1.0
CA B:CYS1007 4.2 77.3 1.0
CA B:CYS991 4.3 56.4 1.0
C B:SER990 4.5 58.5 1.0
CA B:CYS988 4.6 51.5 1.0
CA B:PRO1008 4.7 72.1 1.0
N B:HIS958 4.8 70.0 1.0
C B:CYS1007 4.8 69.8 1.0
N B:ASN959 4.8 61.3 1.0
CB B:TYR993 4.9 49.1 1.0
C B:HIS958 4.9 66.5 1.0

Zinc binding site 4 out of 10 in 7z6e

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Zinc binding site 4 out of 10 in the Structure of the C1-pH-Cnh Regulatory Module of MRCK1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Structure of the C1-pH-Cnh Regulatory Module of MRCK1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn1602

b:42.9
occ:1.00
 ND1 B:HIS996 2.1 42.9 1.0
SG B:CYS999 2.3 45.6 1.0
SG B:CYS971 2.4 44.6 1.0
SG B:CYS974 2.4 37.7 1.0
CE1 B:HIS996 3.0 41.9 1.0
CB B:CYS971 3.1 40.3 1.0
CG B:HIS996 3.1 40.2 1.0
CB B:CYS974 3.4 43.9 1.0
CB B:CYS999 3.4 50.7 1.0
CB B:HIS996 3.5 41.0 1.0
N B:CYS974 3.8 48.7 1.0
N B:HIS996 4.0 39.7 1.0
NE2 B:HIS996 4.1 38.5 1.0
CA B:CYS974 4.1 46.5 1.0
CD2 B:HIS996 4.2 38.9 1.0
CA B:HIS996 4.4 44.7 1.0
CA B:CYS971 4.6 41.2 1.0
CA B:CYS999 4.7 54.9 1.0
C B:CYS974 4.8 42.1 1.0
C B:HIS973 4.9 55.5 1.0
CB B:HIS973 4.9 54.3 1.0

Zinc binding site 5 out of 10 in 7z6e

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Zinc binding site 5 out of 10 in the Structure of the C1-pH-Cnh Regulatory Module of MRCK1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Structure of the C1-pH-Cnh Regulatory Module of MRCK1 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn1601

b:48.6
occ:1.00
 O C:HOH1709 1.7 59.4 1.0
ND1 C:HIS958 2.1 65.1 1.0
SG C:CYS991 2.3 52.6 1.0
SG C:CYS1007 2.3 58.9 1.0
SG C:CYS988 2.4 51.0 1.0
CE1 C:HIS958 3.0 70.1 1.0
CG C:HIS958 3.2 62.1 1.0
CB C:CYS1007 3.2 71.0 1.0
CB C:CYS988 3.3 45.8 1.0
CB C:CYS991 3.4 56.2 1.0
CB C:HIS958 3.6 57.4 1.0
N C:CYS991 3.8 54.3 1.0
CA C:HIS958 3.9 61.2 1.0
CA C:CYS1007 4.1 75.2 1.0
NE2 C:HIS958 4.2 72.5 1.0
CA C:CYS991 4.2 55.5 1.0
CD2 C:HIS958 4.3 66.6 1.0
CB C:SER990 4.4 56.9 1.0
C C:SER990 4.6 56.6 1.0
CB C:TYR993 4.7 47.1 1.0
N C:ASN959 4.7 53.0 1.0
CA C:CYS988 4.7 46.8 1.0
N C:HIS958 4.7 68.3 1.0
O C:GLY957 4.8 69.6 1.0
CA C:SER990 4.9 55.6 1.0
C C:HIS958 4.9 60.3 1.0
N C:SER990 4.9 52.1 1.0
C C:CYS1007 4.9 70.1 1.0
O C:CYS988 5.0 46.3 1.0

Zinc binding site 6 out of 10 in 7z6e

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Zinc binding site 6 out of 10 in the Structure of the C1-pH-Cnh Regulatory Module of MRCK1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Structure of the C1-pH-Cnh Regulatory Module of MRCK1 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn1602

b:44.4
occ:1.00
 ND1 C:HIS996 2.1 44.8 1.0
SG C:CYS974 2.2 45.2 1.0
SG C:CYS999 2.3 56.0 1.0
SG C:CYS971 2.3 44.4 1.0
CE1 C:HIS996 3.0 44.5 1.0
CB C:CYS971 3.1 44.3 1.0
CG C:HIS996 3.1 39.9 1.0
CB C:CYS999 3.3 52.0 1.0
CB C:CYS974 3.3 51.9 1.0
CB C:HIS996 3.4 38.4 1.0
N C:CYS974 3.8 52.6 1.0
N C:HIS996 3.9 40.4 1.0
CA C:CYS974 4.1 51.0 1.0
NE2 C:HIS996 4.1 43.7 1.0
CD2 C:HIS996 4.2 39.7 1.0
CA C:HIS996 4.3 39.8 1.0
CA C:CYS971 4.6 43.9 1.0
CA C:CYS999 4.7 54.4 1.0
CB C:HIS973 4.8 54.7 1.0
C C:HIS973 4.8 53.0 1.0
C C:CYS974 4.9 50.6 1.0
N C:THR975 5.0 48.6 1.0
O C:SER976 5.0 45.2 1.0

Zinc binding site 7 out of 10 in 7z6e

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Zinc binding site 7 out of 10 in the Structure of the C1-pH-Cnh Regulatory Module of MRCK1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Structure of the C1-pH-Cnh Regulatory Module of MRCK1 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn1601

b:41.5
occ:1.00
 ND1 D:HIS996 2.1 49.5 1.0
SG D:CYS999 2.3 44.7 1.0
SG D:CYS974 2.3 39.8 1.0
SG D:CYS971 2.4 47.6 1.0
CE1 D:HIS996 3.0 46.6 1.0
CB D:CYS971 3.0 43.1 1.0
CG D:HIS996 3.1 43.8 1.0
CB D:CYS999 3.3 56.0 1.0
CB D:CYS974 3.5 45.0 1.0
CB D:HIS996 3.5 46.6 1.0
N D:CYS974 3.9 47.4 1.0
N D:HIS996 3.9 41.0 1.0
NE2 D:HIS996 4.1 43.7 1.0
CD2 D:HIS996 4.2 43.1 1.0
CA D:CYS974 4.3 46.1 1.0
CA D:HIS996 4.3 49.1 1.0
CA D:CYS971 4.5 46.0 1.0
CA D:CYS999 4.7 60.0 1.0
CB D:HIS973 4.9 52.4 1.0
C D:CYS974 4.9 42.8 1.0
CD2 D:HIS973 4.9 61.0 1.0
C D:HIS973 5.0 48.1 1.0
N D:THR975 5.0 41.6 1.0
N D:CYS999 5.0 60.3 1.0

Zinc binding site 8 out of 10 in 7z6e

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Zinc binding site 8 out of 10 in the Structure of the C1-pH-Cnh Regulatory Module of MRCK1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Structure of the C1-pH-Cnh Regulatory Module of MRCK1 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn1602

b:57.6
occ:1.00
 ND1 D:HIS958 2.1 71.6 1.0
CB D:CYS991 2.2 60.7 1.0
SG D:CYS988 2.3 59.2 1.0
SG D:CYS991 2.3 60.1 1.0
SG D:CYS1007 2.4 64.8 1.0
CE1 D:HIS958 2.4 72.0 1.0
CB D:CYS1007 3.2 74.4 1.0
CG D:HIS958 3.4 69.2 1.0
CB D:CYS988 3.4 55.6 1.0
CA D:CYS991 3.6 62.7 1.0
NE2 D:HIS958 3.7 71.1 1.0
CA D:CYS1007 4.1 80.7 1.0
CD2 D:HIS958 4.1 70.5 1.0
CA D:HIS958 4.1 67.8 1.0
CB D:HIS958 4.1 66.2 1.0
N D:CYS991 4.2 62.4 1.0
C D:SER990 4.6 66.0 1.0
CB D:TYR993 4.7 55.6 1.0
N D:ASN959 4.7 65.6 1.0
C D:CYS991 4.7 60.1 1.0
CB D:SER990 4.7 68.0 1.0
CA D:CYS988 4.8 55.9 1.0
C D:CYS1007 4.9 72.7 1.0
CA D:PRO1008 4.9 74.3 1.0

Zinc binding site 9 out of 10 in 7z6e

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Zinc binding site 9 out of 10 in the Structure of the C1-pH-Cnh Regulatory Module of MRCK1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Structure of the C1-pH-Cnh Regulatory Module of MRCK1 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn1601

b:50.7
occ:1.00
 ND1 E:HIS958 2.1 62.1 1.0
SG E:CYS991 2.3 49.2 1.0
SG E:CYS1007 2.3 57.5 1.0
SG E:CYS988 2.3 50.8 1.0
CE1 E:HIS958 2.5 61.1 1.0
CB E:CYS1007 3.2 65.3 1.0
CB E:CYS988 3.3 50.0 1.0
CB E:CYS991 3.3 52.0 1.0
CG E:HIS958 3.4 64.5 1.0
N E:CYS991 3.7 54.3 1.0
NE2 E:HIS958 3.7 69.0 1.0
CA E:CYS1007 4.0 67.5 1.0
CA E:HIS958 4.1 63.5 1.0
CA E:CYS991 4.1 52.5 1.0
CB E:HIS958 4.2 62.8 1.0
CD2 E:HIS958 4.2 69.5 1.0
CB E:SER990 4.3 58.8 1.0
N E:ASN959 4.6 55.8 1.0
CA E:PRO1008 4.7 65.4 1.0
C E:SER990 4.7 56.6 1.0
CA E:CYS988 4.7 54.2 1.0
C E:CYS1007 4.8 69.2 1.0
CA E:SER990 4.9 58.4 1.0
OG E:SER990 4.9 60.8 1.0
C E:HIS958 5.0 59.2 1.0
C E:CYS991 5.0 54.0 1.0
N E:SER990 5.0 54.8 1.0

Zinc binding site 10 out of 10 in 7z6e

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Zinc binding site 10 out of 10 in the Structure of the C1-pH-Cnh Regulatory Module of MRCK1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of Structure of the C1-pH-Cnh Regulatory Module of MRCK1 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn1602

b:50.3
occ:1.00
 ND1 E:HIS996 2.0 53.2 1.0
SG E:CYS999 2.3 50.4 1.0
SG E:CYS974 2.3 47.5 1.0
SG E:CYS971 2.4 52.6 1.0
CE1 E:HIS996 2.8 50.6 1.0
CB E:CYS971 3.0 49.8 1.0
CG E:HIS996 3.1 48.6 1.0
CB E:CYS999 3.2 55.3 1.0
CB E:CYS974 3.4 50.5 1.0
CB E:HIS996 3.6 49.7 1.0
N E:CYS974 3.8 52.3 1.0
NE2 E:HIS996 3.9 45.4 1.0
N E:HIS996 4.0 47.3 1.0
CD2 E:HIS996 4.0 49.3 1.0
CA E:CYS974 4.2 51.2 1.0
CA E:HIS996 4.4 51.4 1.0
CA E:CYS971 4.5 46.8 1.0
CA E:CYS999 4.6 61.1 1.0
CB E:HIS973 4.7 55.4 1.0
C E:HIS973 4.9 53.3 1.0
C E:CYS974 4.9 47.2 1.0
N E:THR975 5.0 49.1 1.0

Reference:

L.Truebestein, E.Fuchs, C.Gehin, A.C.Gavin, T.A.Leonard. Structure and Regulation of the Myotonic Dystrophy Kinase-Related CDC42-Binding Kinase To Be Published.
Page generated: Wed Oct 30 16:15:01 2024

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