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Zinc in PDB 8wkg: Rational Design of Highly Selective PDE5 Inhibitors For the Treatment of Idiopathic Pulmonary Fibrosis

Enzymatic activity of Rational Design of Highly Selective PDE5 Inhibitors For the Treatment of Idiopathic Pulmonary Fibrosis

All present enzymatic activity of Rational Design of Highly Selective PDE5 Inhibitors For the Treatment of Idiopathic Pulmonary Fibrosis:
3.1.4.35;

Protein crystallography data

The structure of Rational Design of Highly Selective PDE5 Inhibitors For the Treatment of Idiopathic Pulmonary Fibrosis, PDB code: 8wkg was solved by F.C.Zhang, Y.Y.Huang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.27 / 2.40
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 74.09, 74.09, 131.084, 90, 90, 120
R / Rfree (%) 18.6 / 23.5

Other elements in 8wkg:

The structure of Rational Design of Highly Selective PDE5 Inhibitors For the Treatment of Idiopathic Pulmonary Fibrosis also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Magnesium (Mg) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Rational Design of Highly Selective PDE5 Inhibitors For the Treatment of Idiopathic Pulmonary Fibrosis (pdb code 8wkg). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Rational Design of Highly Selective PDE5 Inhibitors For the Treatment of Idiopathic Pulmonary Fibrosis, PDB code: 8wkg:

Zinc binding site 1 out of 1 in 8wkg

Go back to Zinc Binding Sites List in 8wkg
Zinc binding site 1 out of 1 in the Rational Design of Highly Selective PDE5 Inhibitors For the Treatment of Idiopathic Pulmonary Fibrosis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Rational Design of Highly Selective PDE5 Inhibitors For the Treatment of Idiopathic Pulmonary Fibrosis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn902

b:42.4
occ:1.00
 O2 A:WDB901 2.1 52.9 1.0
NE2 A:HIS653 2.1 35.8 1.0
NE2 A:HIS617 2.2 34.4 1.0
OD1 A:ASP764 2.2 31.6 1.0
O A:HOH1033 2.3 35.3 1.0
OD2 A:ASP654 2.3 34.1 1.0
CD2 A:HIS653 2.9 29.8 1.0
C A:WDB901 3.0 31.8 1.0
CG A:ASP764 3.1 29.7 1.0
CD2 A:HIS617 3.2 33.2 1.0
OD2 A:ASP764 3.2 29.2 1.0
CE1 A:HIS617 3.2 28.4 1.0
CG A:ASP654 3.2 36.5 1.0
CE1 A:HIS653 3.3 30.8 1.0
O A:WDB901 3.6 40.0 1.0
OD1 A:ASP654 3.7 30.9 1.0
MG A:MG903 3.7 37.8 1.0
O A:HOH1009 3.7 29.6 1.0
CG A:HIS653 4.1 34.0 1.0
C1 A:WDB901 4.2 36.3 1.0
ND1 A:HIS653 4.3 30.1 1.0
ND1 A:HIS617 4.3 35.2 1.0
CD2 A:HIS613 4.3 38.1 1.0
CG A:HIS617 4.3 32.3 1.0
CB A:ASP654 4.4 27.8 1.0
CB A:ASP764 4.5 29.8 1.0
NE2 A:HIS613 4.7 35.0 1.0
O A:HOH1005 4.9 29.7 1.0
CA A:ASP764 4.9 34.1 1.0
O A:ASP764 4.9 39.9 1.0

Reference:

F.C.Zhang, Y.Y.Huang, H.B.Luo, Y.N.Wu. Rational Design of Highly Selective PDE5 Inhibitors For the Treatment of Idiopathic Pulmonary Fibrosis To Be Published.
Page generated: Fri Aug 22 15:13:18 2025

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