Zinc in PDB 7ymo: Crystal Structure of the Recombination Mediator Protein Reco From Campylobacter Jejuni

Protein crystallography data

The structure of Crystal Structure of the Recombination Mediator Protein Reco From Campylobacter Jejuni, PDB code: 7ymo was solved by S.Lee, H.B.Oh, S.I.Yoon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.69 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 39.147, 61.711, 97.204, 90, 90, 90
R / Rfree (%) 17.9 / 20.8

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the Recombination Mediator Protein Reco From Campylobacter Jejuni (pdb code 7ymo). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of the Recombination Mediator Protein Reco From Campylobacter Jejuni, PDB code: 7ymo:

Zinc binding site 1 out of 1 in 7ymo

Go back to Zinc Binding Sites List in 7ymo
Zinc binding site 1 out of 1 in the Crystal Structure of the Recombination Mediator Protein Reco From Campylobacter Jejuni


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Recombination Mediator Protein Reco From Campylobacter Jejuni within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn301

b:26.5
occ:1.00
ND1 A:HIS162 2.2 33.6 1.0
SG A:CYS165 2.2 29.5 1.0
SG A:CYS141 2.3 27.1 1.0
SG A:CYS144 2.4 33.8 1.0
CB A:CYS141 2.9 27.8 1.0
CE1 A:HIS162 3.2 33.7 1.0
CG A:HIS162 3.2 31.7 1.0
CB A:CYS165 3.3 25.9 1.0
CB A:CYS144 3.4 35.0 1.0
CB A:HIS162 3.5 28.2 1.0
N A:CYS144 3.8 32.7 1.0
N A:HIS162 3.9 23.6 1.0
CA A:CYS144 4.1 35.1 1.0
NE2 A:HIS162 4.3 33.5 1.0
CD2 A:HIS162 4.3 32.7 1.0
CA A:HIS162 4.3 25.5 1.0
CA A:CYS141 4.4 27.1 1.0
CB A:ALA143 4.5 37.8 1.0
CA A:CYS165 4.7 27.8 1.0
C A:ALA143 4.8 35.3 1.0
C A:CYS144 4.9 36.0 1.0
OG A:SER161 4.9 24.6 1.0
N A:ALA143 5.0 33.1 1.0

Reference:

S.J.Lee, H.B.Oh, S.I.Yoon. Crystal Structure of the Recombination Mediator Protein Reco From Campylobacter Jejuni and Its Interaction with Dna and A Zinc Ion. Int J Mol Sci V. 23 2022.
ISSN: ESSN 1422-0067
PubMed: 36077065
DOI: 10.3390/IJMS23179667
Page generated: Sat Apr 8 06:22:12 2023

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