Zinc in PDB 7yka: Crystal Structure of FIS1 (Mitochondrial Fission 1 Protein)

The structure of Crystal Structure of FIS1 (Mitochondrial Fission 1 Protein), PDB code: 7yka was solved by N.M.Duc, S.M.Bong, B.I.Lee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.75 / 2.30
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	44.822, 56.283, 57.012, 90, 100.07, 90
R / Rfree (%)	22.6 / 25

The binding sites of Zinc atom in the Crystal Structure of FIS1 (Mitochondrial Fission 1 Protein) (pdb code 7yka). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 9 binding sites of Zinc where determined in the Crystal Structure of FIS1 (Mitochondrial Fission 1 Protein), PDB code: 7yka:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Zinc binding site 1 out of 9 in the Crystal Structure of FIS1 (Mitochondrial Fission 1 Protein)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of FIS1 (Mitochondrial Fission 1 Protein) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn501 b:60.8 occ:1.00 ZN A:ZN503 2.8 28.6 1.0 CD1 A:TYR47 3.6 20.1 1.0 CB A:TYR47 3.8 25.1 1.0 CG A:TYR47 3.8 27.4 1.0 OD1 A:ASP49 4.2 23.1 1.0 CE1 A:TYR47 4.4 18.7 1.0 ZN A:ZN504 4.7 69.8 1.0 CD2 A:TYR47 4.8 39.2 1.0 CG A:ASP49 4.8 32.0 1.0 CA A:TYR47 4.9 26.5 1.0

Zinc binding site 2 out of 9 in the Crystal Structure of FIS1 (Mitochondrial Fission 1 Protein)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of FIS1 (Mitochondrial Fission 1 Protein) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn502 b:70.8 occ:1.00 ZN A:ZN505 3.0 26.1 1.0 OE2 A:GLU18 3.7 77.2 1.0 CD2 A:LEU14 3.8 23.3 1.0 OD1 A:ASP50 4.1 27.7 1.0 CG A:LEU14 4.2 27.2 1.0 CD A:GLU18 4.4 48.4 1.0 CD1 A:LEU14 4.5 17.5 1.0 CD2 A:LEU42 4.7 11.4 1.0 OH A:TYR38 4.7 34.2 1.0 CG A:ASP50 4.9 30.1 1.0 OE1 A:GLU18 4.9 78.7 1.0

Zinc binding site 3 out of 9 in the Crystal Structure of FIS1 (Mitochondrial Fission 1 Protein)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of FIS1 (Mitochondrial Fission 1 Protein) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn503 b:28.6 occ:1.00 OD2 A:ASP49 2.6 63.6 1.0 OD1 A:ASP49 2.7 23.1 1.0 ZN A:ZN501 2.8 60.8 1.0 CG A:ASP49 2.9 32.0 1.0 ZN A:ZN504 3.1 69.8 1.0 CB A:ASP49 4.3 17.5 1.0 CB A:TYR47 4.4 25.1 1.0 CG A:TYR47 4.9 27.4 1.0

Zinc binding site 4 out of 9 in the Crystal Structure of FIS1 (Mitochondrial Fission 1 Protein)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of FIS1 (Mitochondrial Fission 1 Protein) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn504 b:69.8 occ:1.00 ZN A:ZN503 3.1 28.6 1.0 ZN A:ZN505 3.1 26.1 1.0 OD2 A:ASP50 3.8 65.7 1.0 OD1 A:ASP50 4.1 27.7 1.0 CD2 A:TYR47 4.1 39.2 1.0 OD1 A:ASP49 4.1 23.1 1.0 OD2 A:ASP49 4.3 63.6 1.0 CG A:ASP50 4.3 30.1 1.0 CG A:TYR47 4.5 27.4 1.0 CB A:TYR47 4.5 25.1 1.0 CG A:ASP49 4.6 32.0 1.0 ZN A:ZN501 4.7 60.8 1.0 CE2 A:TYR47 4.7 30.9 1.0

Zinc binding site 5 out of 9 in the Crystal Structure of FIS1 (Mitochondrial Fission 1 Protein)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Crystal Structure of FIS1 (Mitochondrial Fission 1 Protein) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn505 b:26.1 occ:1.00 OD2 A:ASP50 2.6 65.7 1.0 OD1 A:ASP50 2.7 27.7 1.0 CG A:ASP50 2.9 30.1 1.0 ZN A:ZN502 3.0 70.8 1.0 ZN A:ZN504 3.1 69.8 1.0 CD2 A:LEU14 4.2 23.3 1.0 CB A:ASP50 4.3 24.8 1.0 OG A:SER45 4.4 31.0 1.0 CD2 A:TYR47 4.9 39.2 1.0

Zinc binding site 6 out of 9 in the Crystal Structure of FIS1 (Mitochondrial Fission 1 Protein)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Crystal Structure of FIS1 (Mitochondrial Fission 1 Protein) within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn201 b:73.1 occ:1.00 OE2 B:GLU37 2.8 68.9 1.0 OE2 A:GLU37 2.9 69.5 1.0 CZ3 B:TRP40 3.1 49.2 1.0 CG B:GLU37 3.2 46.5 1.0 CD A:GLU37 3.3 47.6 1.0 CD B:GLU37 3.4 51.3 1.0 CE3 B:TRP40 3.6 56.9 1.0 CG A:GLU37 3.8 49.3 1.0 CH2 B:TRP40 3.9 57.8 1.0 OE1 A:GLU37 4.1 68.7 1.0 CZ B:PHE17 4.4 46.2 1.0 CZ A:PHE17 4.5 37.9 1.0 OE1 B:GLU37 4.6 74.1 1.0 CB B:GLU37 4.6 37.1 1.0 CD2 B:TRP40 4.7 43.5 1.0 CB A:GLU37 4.8 33.9 1.0 CE2 B:PHE17 4.8 47.2 1.0 CZ2 B:TRP40 5.0 50.7 1.0

Zinc binding site 7 out of 9 in the Crystal Structure of FIS1 (Mitochondrial Fission 1 Protein)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Crystal Structure of FIS1 (Mitochondrial Fission 1 Protein) within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn202 b:68.5 occ:1.00 OE2 B:GLU111 2.6 46.5 1.0 OE1 B:GLU111 3.2 53.0 1.0 CD B:GLU111 3.2 36.0 1.0 NZ B:LYS108 4.0 80.4 1.0 NE B:ARG95 4.1 45.9 1.0 CG B:GLU111 4.6 36.4 1.0 CD B:ARG95 4.8 29.6 1.0 CG B:ARG95 4.8 32.9 1.0 NH2 B:ARG95 4.9 32.4 1.0

Zinc binding site 8 out of 9 in the Crystal Structure of FIS1 (Mitochondrial Fission 1 Protein)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Crystal Structure of FIS1 (Mitochondrial Fission 1 Protein) within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn203 b:82.5 occ:1.00 OE2 B:GLU101 2.7 92.7 1.0 O A:HOH607 2.8 33.9 1.0 OE1 B:GLU101 3.0 70.3 1.0 CD B:GLU101 3.2 66.5 1.0 CD B:ARG71 3.7 62.9 1.0 O A:HOH601 4.0 24.2 1.0 OE2 B:GLU68 4.1 78.6 1.0 OE1 B:GLU68 4.3 71.3 1.0 CB B:ARG71 4.4 41.2 1.0 ND2 B:ASN104 4.5 49.8 1.0 CG B:GLU101 4.7 61.7 1.0 CD B:GLU68 4.7 85.8 1.0 CG B:ARG71 4.7 47.6 1.0 NE B:ARG71 4.7 80.2 1.0 NH1 B:ARG71 4.8 66.9 1.0

Zinc binding site 9 out of 9 in the Crystal Structure of FIS1 (Mitochondrial Fission 1 Protein)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Crystal Structure of FIS1 (Mitochondrial Fission 1 Protein) within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn204 b:93.3 occ:1.00 OE2 B:GLU18 2.7 83.3 1.0 OE1 B:GLU18 3.3 48.6 1.0 CD B:GLU18 3.4 60.3 1.0 CG B:GLU18 4.8 39.8 1.0

N.M.Duc, S.M.Bong, B.I.Lee. Insight Into the Mitochondria-Er Tethering Revealed By the Crystal Structure of FIS1-BAP31 Complex To Be Published.