Zinc in PDB 7ybg: Crystal Structure of the Sars-Cov-2 Papain-Like Protease (C111S Mutant)

Enzymatic activity of Crystal Structure of the Sars-Cov-2 Papain-Like Protease (C111S Mutant)

All present enzymatic activity of Crystal Structure of the Sars-Cov-2 Papain-Like Protease (C111S Mutant):
3.4.19.12;

Protein crystallography data

The structure of Crystal Structure of the Sars-Cov-2 Papain-Like Protease (C111S Mutant), PDB code: 7ybg was solved by R.Zeng, J.Lei, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.42 / 1.90
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 80.856, 80.856, 135.938, 90, 90, 120
R / Rfree (%) 17.3 / 20.7

Other elements in 7ybg:

The structure of Crystal Structure of the Sars-Cov-2 Papain-Like Protease (C111S Mutant) also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Sodium (Na) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the Sars-Cov-2 Papain-Like Protease (C111S Mutant) (pdb code 7ybg). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of the Sars-Cov-2 Papain-Like Protease (C111S Mutant), PDB code: 7ybg:

Zinc binding site 1 out of 1 in 7ybg

Go back to Zinc Binding Sites List in 7ybg
Zinc binding site 1 out of 1 in the Crystal Structure of the Sars-Cov-2 Papain-Like Protease (C111S Mutant)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Sars-Cov-2 Papain-Like Protease (C111S Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn403

b:42.4
occ:1.00
 SG A:CYS189 2.2 47.2 1.0
SG A:CYS224 2.3 42.8 1.0
SG A:CYS226 2.4 44.4 1.0
SG A:CYS192 2.5 50.1 1.0
CB A:CYS226 3.2 43.9 1.0
CB A:CYS189 3.2 46.6 1.0
CB A:CYS224 3.4 40.7 1.0
CB A:CYS192 3.5 49.7 1.0
N A:CYS192 4.0 51.9 1.0
N A:CYS226 4.1 43.7 1.0
CA A:CYS226 4.2 43.5 1.0
CA A:CYS192 4.4 50.3 1.0
CG2 A:THR191 4.4 57.0 1.0
CB A:THR191 4.5 56.5 1.0
NZ A:LYS228 4.6 43.8 0.5
CA A:CYS189 4.6 46.9 1.0
CA A:CYS224 4.7 40.5 1.0
N A:THR225 4.9 42.0 1.0
C A:CYS224 4.9 41.4 1.0
C A:THR191 4.9 53.8 1.0
N A:THR191 5.0 53.4 1.0

Reference:

R.Zeng, J.Lei. Crystal Structure of the Sars-Cov-2 Papain-Like Protease (C111S Mutant) To Be Published.
Page generated: Wed Oct 30 15:44:52 2024

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