Zinc in PDB 7wwt: Cu/Zn-Superoxide Dismutase From Dog (Canis Familiaris)

Enzymatic activity of Cu/Zn-Superoxide Dismutase From Dog (Canis Familiaris)

All present enzymatic activity of Cu/Zn-Superoxide Dismutase From Dog (Canis Familiaris):
1.15.1.1;

Protein crystallography data

The structure of Cu/Zn-Superoxide Dismutase From Dog (Canis Familiaris), PDB code: 7wwt was solved by S.Narikiyo, Y.Furukawa, M.Akutsu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.92 / 1.60
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 50.862, 50.862, 283.405, 90, 90, 90
R / Rfree (%) 23.8 / 27.5

Other elements in 7wwt:

The structure of Cu/Zn-Superoxide Dismutase From Dog (Canis Familiaris) also contains other interesting chemical elements:

Copper (Cu) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Cu/Zn-Superoxide Dismutase From Dog (Canis Familiaris) (pdb code 7wwt). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cu/Zn-Superoxide Dismutase From Dog (Canis Familiaris), PDB code: 7wwt:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 7wwt

Go back to Zinc Binding Sites List in 7wwt
Zinc binding site 1 out of 2 in the Cu/Zn-Superoxide Dismutase From Dog (Canis Familiaris)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cu/Zn-Superoxide Dismutase From Dog (Canis Familiaris) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:18.1
occ:1.00
ND1 A:HIS80 2.0 16.1 1.0
ND1 A:HIS63 2.0 17.2 1.0
OD1 A:ASP83 2.0 17.4 1.0
ND1 A:HIS71 2.1 13.6 1.0
CG A:ASP83 2.7 17.1 1.0
OD2 A:ASP83 2.8 16.9 1.0
CE1 A:HIS63 2.9 18.5 1.0
CE1 A:HIS71 3.0 12.6 1.0
CE1 A:HIS80 3.0 15.2 1.0
CG A:HIS63 3.0 17.2 1.0
CG A:HIS80 3.1 16.6 1.0
CG A:HIS71 3.1 12.4 1.0
CB A:HIS63 3.4 17.8 1.0
CB A:HIS80 3.5 17.4 1.0
CB A:HIS71 3.5 14.7 1.0
O A:GLN136 3.8 17.7 1.0
CA A:HIS71 3.9 15.4 1.0
NE2 A:HIS80 4.1 17.6 1.0
NE2 A:HIS71 4.1 12.8 1.0
NE2 A:HIS63 4.1 19.6 1.0
CD2 A:HIS63 4.1 20.4 1.0
CD2 A:HIS80 4.2 16.6 1.0
CB A:ASP83 4.2 15.8 1.0
CD2 A:HIS71 4.2 14.2 1.0
N A:HIS80 4.7 19.4 1.0
CA A:ASP83 4.7 17.0 1.0
CA A:HIS80 4.8 18.0 1.0
N A:GLY72 4.8 15.5 1.0
C A:GLN136 4.8 17.8 1.0
O A:HOH420 4.8 19.5 1.0
CA A:HIS63 4.9 17.7 1.0
C A:HIS71 4.9 16.2 1.0
CD2 A:HIS46 4.9 19.6 1.0
N A:HIS71 4.9 15.8 1.0
N A:ASP83 5.0 18.2 1.0

Zinc binding site 2 out of 2 in 7wwt

Go back to Zinc Binding Sites List in 7wwt
Zinc binding site 2 out of 2 in the Cu/Zn-Superoxide Dismutase From Dog (Canis Familiaris)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cu/Zn-Superoxide Dismutase From Dog (Canis Familiaris) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn201

b:35.8
occ:1.00
ND1 B:HIS63 1.8 31.6 1.0
OD1 B:ASP83 1.9 40.3 1.0
ND1 B:HIS80 2.0 31.9 1.0
ND1 B:HIS71 2.1 37.8 1.0
CG B:ASP83 2.7 40.6 1.0
CE1 B:HIS63 2.8 35.5 1.0
OD2 B:ASP83 2.8 40.4 1.0
CG B:HIS63 2.9 36.2 1.0
CE1 B:HIS80 3.0 34.0 1.0
CE1 B:HIS71 3.0 42.9 1.0
CG B:HIS80 3.0 31.6 1.0
CG B:HIS71 3.3 43.7 1.0
CB B:HIS63 3.3 36.1 1.0
CB B:HIS80 3.4 33.2 1.0
CB B:HIS71 3.7 36.8 1.0
CA B:HIS71 3.9 38.3 1.0
NE2 B:HIS63 3.9 32.2 1.0
O B:GLN136 3.9 43.5 1.0
CD2 B:HIS63 4.0 34.4 1.0
NE2 B:HIS80 4.0 31.8 1.0
CD2 B:HIS80 4.0 29.9 1.0
CB B:ASP83 4.1 37.7 1.0
NE2 B:HIS71 4.2 39.7 1.0
CD2 B:HIS71 4.3 41.5 1.0
O B:HOH371 4.5 42.0 1.0
CA B:HIS80 4.6 36.2 1.0
N B:HIS80 4.6 34.4 1.0
CA B:ASP83 4.7 33.0 1.0
N B:GLY72 4.7 41.4 1.0
CD2 B:HIS46 4.8 31.3 1.0
N B:HIS71 4.9 33.0 1.0
C B:HIS71 4.9 43.9 1.0
CA B:HIS63 4.9 35.9 1.0
N B:ASP83 4.9 35.5 1.0
O B:GLY72 5.0 40.5 1.0
C B:GLN136 5.0 47.5 1.0

Reference:

S.Narikiyo, Y.Furukawa, M.Akutsu. Crystal Structure of Dog Superoxide Dismutase To Be Published.
Page generated: Sat Apr 8 05:31:10 2023

Last articles

Zn in 3HKQ
Zn in 3HKA
Zn in 3HKO
Zn in 3HKN
Zn in 3HK8
Zn in 3HK5
Zn in 3HJT
Zn in 3HJW
Zn in 3HGZ
Zn in 3HI2
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy