Zinc in PDB 7wpc: The Second Rbd of Sars-Cov-2 Omicron Variant in Complexed with Rbd- ACE2

All present enzymatic activity of The Second Rbd of Sars-Cov-2 Omicron Variant in Complexed with Rbd- ACE2:
3.4.17.23;

The structure of The Second Rbd of Sars-Cov-2 Omicron Variant in Complexed with Rbd- ACE2 also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Zinc atom in the The Second Rbd of Sars-Cov-2 Omicron Variant in Complexed with Rbd- ACE2 (pdb code 7wpc). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the The Second Rbd of Sars-Cov-2 Omicron Variant in Complexed with Rbd- ACE2, PDB code: 7wpc:

Zinc binding site 1 out of 1 in the The Second Rbd of Sars-Cov-2 Omicron Variant in Complexed with Rbd- ACE2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Second Rbd of Sars-Cov-2 Omicron Variant in Complexed with Rbd- ACE2 within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn902 b:51.6 occ:1.00 OE2 D:GLU402 2.3 43.5 1.0 NE2 D:HIS374 2.4 43.4 1.0 CE1 D:HIS378 2.5 42.0 1.0 CD2 D:HIS374 2.8 43.4 1.0 CD D:GLU402 3.1 43.5 1.0 OE1 D:GLU402 3.4 43.5 1.0 ND1 D:HIS378 3.4 42.0 1.0 NE2 D:HIS378 3.5 42.0 1.0 CE1 D:HIS374 3.6 43.4 1.0 CG D:HIS374 4.1 43.4 1.0 ND1 D:HIS374 4.5 43.4 1.0 CG D:GLU402 4.5 43.5 1.0 CG D:HIS378 4.6 42.0 1.0 CD2 D:HIS378 4.7 42.0 1.0 CG D:GLU375 4.8 45.7 1.0 O D:HIS374 5.0 43.4 1.0

W.Yin, Y.Xu, P.Xu, X.Cao, C.Wu, C.Gu, X.He, X.Wang, S.Huang, Q.Yuan, K.Wu, W.Hu, Z.Huang, J.Liu, Z.Wang, F.Jia, K.Xia, P.Liu, X.Wang, B.Song, J.Zheng, H.Jiang, X.Cheng, Y.Jiang, S.J.Deng, H.E.Xu. Structures of the Omicron Spike Trimer with ACE2 and An Anti-Omicron Antibody. Science V. 375 1048 2022.
ISSN: ESSN 1095-9203
PubMed: 35133176
DOI: 10.1126/SCIENCE.ABN8863