Zinc in PDB 7wpa: Sars-Cov-2 Omicron Variant Spike Trimer Complexed with ACE2

Enzymatic activity of Sars-Cov-2 Omicron Variant Spike Trimer Complexed with ACE2

All present enzymatic activity of Sars-Cov-2 Omicron Variant Spike Trimer Complexed with ACE2:
3.4.17.23;

Other elements in 7wpa:

The structure of Sars-Cov-2 Omicron Variant Spike Trimer Complexed with ACE2 also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Sars-Cov-2 Omicron Variant Spike Trimer Complexed with ACE2 (pdb code 7wpa). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Sars-Cov-2 Omicron Variant Spike Trimer Complexed with ACE2, PDB code: 7wpa:

Zinc binding site 1 out of 1 in 7wpa

Go back to Zinc Binding Sites List in 7wpa
Zinc binding site 1 out of 1 in the Sars-Cov-2 Omicron Variant Spike Trimer Complexed with ACE2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Sars-Cov-2 Omicron Variant Spike Trimer Complexed with ACE2 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn902

b:237.0
occ:1.00
CE1 D:HIS378 3.1 226.8 1.0
NE2 D:HIS374 3.7 224.5 1.0
ND1 D:HIS378 3.8 226.8 1.0
OE2 D:GLU375 3.9 224.3 1.0
CG D:GLU402 4.1 222.0 1.0
CG D:GLU375 4.2 224.3 1.0
NE2 D:HIS378 4.2 226.8 1.0
OE2 D:GLU402 4.3 222.0 1.0
CD D:GLU375 4.4 224.3 1.0
CD2 D:HIS374 4.4 224.5 1.0
CE1 D:HIS374 4.7 224.5 1.0
CD D:GLU402 4.7 222.0 1.0

Reference:

W.Yin, Y.Xu, P.Xu, X.Cao, C.Wu, C.Gu, X.He, X.Wang, S.Huang, Q.Yuan, K.Wu, W.Hu, Z.Huang, J.Liu, Z.Wang, F.Jia, K.Xia, P.Liu, X.Wang, B.Song, J.Zheng, H.Jiang, X.Cheng, Y.Jiang, S.J.Deng, H.E.Xu. Structures of the Omicron Spike Trimer with ACE2 and An Anti-Omicron Antibody. Science V. 375 1048 2022.
ISSN: ESSN 1095-9203
PubMed: 35133176
DOI: 10.1126/SCIENCE.ABN8863
Page generated: Sat Apr 8 05:20:52 2023

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