Zinc in PDB 7u32: Mvv Cleaved Synaptic Complex (Csc) Intasome at 3.4 A Resolution

Other elements in 7u32:

The structure of Mvv Cleaved Synaptic Complex (Csc) Intasome at 3.4 A Resolution also contains other interesting chemical elements:

Calcium (Ca) 2 atoms

Zinc Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Zinc atom in the Mvv Cleaved Synaptic Complex (Csc) Intasome at 3.4 A Resolution (pdb code 7u32). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 12 binding sites of Zinc where determined in the Mvv Cleaved Synaptic Complex (Csc) Intasome at 3.4 A Resolution, PDB code: 7u32:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 12 in 7u32

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Zinc binding site 1 out of 12 in the Mvv Cleaved Synaptic Complex (Csc) Intasome at 3.4 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Mvv Cleaved Synaptic Complex (Csc) Intasome at 3.4 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn301

b:260.0
occ:1.00
 ND1 A:HIS16 2.0 130.5 1.0
NE2 A:HIS12 2.0 139.4 1.0
SG A:CYS43 2.3 134.2 1.0
SG A:CYS40 2.3 129.9 1.0
CE1 A:HIS16 2.5 136.5 1.0
CE1 A:HIS12 2.6 135.9 1.0
CB A:CYS40 3.0 141.2 1.0
CD2 A:HIS12 3.0 142.8 1.0
CG A:HIS16 3.3 140.3 1.0
ND1 A:HIS12 3.6 141.4 1.0
NE2 A:HIS16 3.8 145.5 1.0
CG A:HIS12 3.8 147.0 1.0
CB A:CYS43 3.9 152.2 1.0
CB A:HIS16 4.0 139.0 1.0
O A:HIS12 4.1 143.5 1.0
CA A:HIS16 4.1 143.9 1.0
CD2 A:HIS16 4.1 143.4 1.0
CA A:CYS40 4.4 140.1 1.0
N A:CYS43 4.5 149.2 1.0
CA A:CYS43 4.8 154.1 1.0
C A:HIS12 4.9 145.2 1.0
C A:HIS16 5.0 147.0 1.0

Zinc binding site 2 out of 12 in 7u32

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Zinc binding site 2 out of 12 in the Mvv Cleaved Synaptic Complex (Csc) Intasome at 3.4 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Mvv Cleaved Synaptic Complex (Csc) Intasome at 3.4 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn301

b:173.0
occ:1.00
 ND1 B:HIS16 2.0 227.2 1.0
NE2 B:HIS12 2.0 232.5 1.0
SG B:CYS40 2.3 242.5 1.0
SG B:CYS43 2.3 236.2 1.0
CE1 B:HIS12 2.4 231.1 1.0
CE1 B:HIS16 3.0 229.0 1.0
CB B:CYS40 3.0 244.2 1.0
CG B:HIS16 3.1 227.5 1.0
CD2 B:HIS12 3.1 233.1 1.0
CB B:HIS16 3.5 223.7 1.0
ND1 B:HIS12 3.5 231.9 1.0
CB B:CYS43 3.7 250.2 1.0
CG B:HIS12 3.9 234.8 1.0
CA B:HIS16 3.9 226.8 1.0
NE2 B:HIS16 4.1 230.2 1.0
CD2 B:HIS16 4.2 229.4 1.0
CA B:CYS40 4.5 246.4 1.0
O B:HIS12 4.5 230.7 1.0
N B:CYS43 4.5 253.9 1.0
C B:HIS16 4.6 230.2 1.0
CA B:CYS43 4.7 250.2 1.0

Zinc binding site 3 out of 12 in 7u32

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Zinc binding site 3 out of 12 in the Mvv Cleaved Synaptic Complex (Csc) Intasome at 3.4 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Mvv Cleaved Synaptic Complex (Csc) Intasome at 3.4 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn301

b:218.9
occ:1.00
 NE2 C:HIS12 2.0 185.1 1.0
ND1 C:HIS16 2.0 170.2 1.0
CE1 C:HIS16 2.3 178.1 1.0
SG C:CYS40 2.3 197.3 1.0
SG C:CYS43 2.3 195.4 1.0
CE1 C:HIS12 2.9 185.3 1.0
CD2 C:HIS12 2.9 187.0 1.0
CB C:CYS40 2.9 203.1 1.0
CG C:HIS16 3.3 175.4 1.0
NE2 C:HIS16 3.5 180.6 1.0
CB C:CYS43 3.8 206.5 1.0
ND1 C:HIS12 3.9 186.0 1.0
CG C:HIS12 3.9 188.1 1.0
CD2 C:HIS16 4.0 177.2 1.0
CB C:HIS16 4.2 176.2 1.0
CA C:HIS16 4.3 176.8 1.0
N C:CYS43 4.3 207.7 1.0
CA C:CYS40 4.4 202.9 1.0
O C:HIS12 4.4 176.8 1.0
CA C:CYS43 4.7 208.1 1.0
O C:VAL37 5.0 199.8 1.0

Zinc binding site 4 out of 12 in 7u32

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Zinc binding site 4 out of 12 in the Mvv Cleaved Synaptic Complex (Csc) Intasome at 3.4 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Mvv Cleaved Synaptic Complex (Csc) Intasome at 3.4 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn301

b:111.9
occ:1.00
 ND1 E:HIS16 2.0 311.8 1.0
NE2 E:HIS12 2.0 311.1 1.0
SG E:CYS40 2.3 336.8 1.0
SG E:CYS43 2.3 337.6 1.0
CE1 E:HIS12 2.9 314.1 1.0
CE1 E:HIS16 2.9 313.7 1.0
CD2 E:HIS12 3.0 311.7 1.0
CG E:HIS16 3.1 314.1 1.0
CB E:CYS40 3.4 338.6 1.0
CB E:HIS16 3.5 315.4 1.0
CA E:HIS16 3.7 314.1 1.0
ND1 E:HIS12 3.9 314.3 1.0
CB E:CYS43 3.9 356.7 1.0
CG E:HIS12 4.0 314.0 1.0
NE2 E:HIS16 4.0 311.7 1.0
CD2 E:HIS16 4.2 312.2 1.0
C E:HIS16 4.4 308.8 1.0
O E:HIS12 4.5 315.1 1.0
N E:CYS43 4.6 367.7 1.0
O E:GLN17 4.7 291.3 1.0
CA E:CYS43 4.8 368.5 1.0
CA E:CYS40 4.8 340.7 1.0
N E:HIS16 4.8 314.6 1.0
O E:HIS16 4.9 307.1 1.0

Zinc binding site 5 out of 12 in 7u32

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Zinc binding site 5 out of 12 in the Mvv Cleaved Synaptic Complex (Csc) Intasome at 3.4 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Mvv Cleaved Synaptic Complex (Csc) Intasome at 3.4 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Zn301

b:117.0
occ:1.00
 ND1 F:HIS16 2.0 463.7 1.0
NE2 F:HIS12 2.0 481.1 1.0
SG F:CYS40 2.3 508.0 1.0
SG F:CYS43 2.3 486.2 1.0
CE1 F:HIS12 2.5 472.8 1.0
CE1 F:HIS16 2.8 468.9 1.0
CD2 F:HIS12 2.9 477.1 1.0
CG F:HIS16 3.2 451.0 1.0
CB F:CYS40 3.3 511.7 1.0
ND1 F:HIS12 3.4 463.0 1.0
CG F:HIS12 3.6 468.9 1.0
CB F:HIS16 3.7 435.4 1.0
CB F:CYS43 3.7 510.2 1.0
CA F:HIS16 3.8 434.3 1.0
O F:HIS12 3.9 455.9 1.0
NE2 F:HIS16 4.0 461.2 1.0
CD2 F:HIS16 4.2 453.7 1.0
C F:HIS12 4.6 461.4 1.0
N F:CYS43 4.6 512.7 1.0
C F:HIS16 4.6 426.1 1.0
CA F:CYS40 4.8 518.3 1.0
N F:HIS16 4.8 431.4 1.0
CA F:CYS43 4.8 514.0 1.0
CB F:HIS12 4.9 469.1 1.0
O F:GLN17 5.0 426.8 1.0

Zinc binding site 6 out of 12 in 7u32

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Zinc binding site 6 out of 12 in the Mvv Cleaved Synaptic Complex (Csc) Intasome at 3.4 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Mvv Cleaved Synaptic Complex (Csc) Intasome at 3.4 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Zn301

b:129.4
occ:1.00
 ND1 G:HIS16 2.0 387.5 1.0
NE2 G:HIS12 2.0 390.9 1.0
SG G:CYS40 2.3 410.9 1.0
SG G:CYS43 2.3 401.8 1.0
CE1 G:HIS12 2.7 387.8 1.0
CD2 G:HIS12 3.0 390.2 1.0
CE1 G:HIS16 3.0 388.0 1.0
CG G:HIS16 3.0 385.6 1.0
CB G:CYS40 3.2 418.1 1.0
CB G:HIS16 3.3 383.5 1.0
ND1 G:HIS12 3.7 386.1 1.0
CA G:HIS16 3.8 382.0 1.0
CG G:HIS12 3.9 389.3 1.0
CB G:CYS43 3.9 422.2 1.0
NE2 G:HIS16 4.1 385.1 1.0
CD2 G:HIS16 4.2 384.8 1.0
O G:HIS12 4.5 388.7 1.0
C G:HIS16 4.6 376.9 1.0
CA G:CYS40 4.7 422.9 1.0
N G:CYS43 4.7 430.9 1.0
CA G:CYS43 4.9 428.3 1.0
O G:HIS16 4.9 374.2 1.0

Zinc binding site 7 out of 12 in 7u32

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Zinc binding site 7 out of 12 in the Mvv Cleaved Synaptic Complex (Csc) Intasome at 3.4 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Mvv Cleaved Synaptic Complex (Csc) Intasome at 3.4 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Zn301

b:260.0
occ:1.00
 ND1 I:HIS16 2.0 130.5 1.0
NE2 I:HIS12 2.0 139.4 1.0
SG I:CYS43 2.3 134.2 1.0
SG I:CYS40 2.3 129.9 1.0
CE1 I:HIS16 2.5 136.5 1.0
CE1 I:HIS12 2.6 135.9 1.0
CB I:CYS40 3.0 141.2 1.0
CD2 I:HIS12 3.0 142.8 1.0
CG I:HIS16 3.3 140.3 1.0
ND1 I:HIS12 3.6 141.4 1.0
NE2 I:HIS16 3.8 145.5 1.0
CG I:HIS12 3.8 147.0 1.0
CB I:CYS43 3.9 152.2 1.0
CB I:HIS16 4.0 139.0 1.0
O I:HIS12 4.1 143.5 1.0
CA I:HIS16 4.1 143.9 1.0
CD2 I:HIS16 4.1 143.4 1.0
CA I:CYS40 4.5 140.1 1.0
N I:CYS43 4.5 149.2 1.0
CA I:CYS43 4.8 154.1 1.0
C I:HIS12 4.9 145.2 1.0
C I:HIS16 5.0 147.0 1.0

Zinc binding site 8 out of 12 in 7u32

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Zinc binding site 8 out of 12 in the Mvv Cleaved Synaptic Complex (Csc) Intasome at 3.4 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Mvv Cleaved Synaptic Complex (Csc) Intasome at 3.4 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Zn301

b:173.0
occ:1.00
 ND1 J:HIS16 2.0 227.2 1.0
NE2 J:HIS12 2.0 232.5 1.0
SG J:CYS40 2.3 242.5 1.0
SG J:CYS43 2.3 236.2 1.0
CE1 J:HIS12 2.4 231.1 1.0
CE1 J:HIS16 3.0 229.0 1.0
CB J:CYS40 3.0 244.2 1.0
CG J:HIS16 3.1 227.5 1.0
CD2 J:HIS12 3.1 233.1 1.0
CB J:HIS16 3.5 223.7 1.0
ND1 J:HIS12 3.5 231.9 1.0
CB J:CYS43 3.7 250.2 1.0
CG J:HIS12 3.9 234.8 1.0
CA J:HIS16 3.9 226.8 1.0
NE2 J:HIS16 4.1 230.2 1.0
CD2 J:HIS16 4.2 229.4 1.0
CA J:CYS40 4.5 246.4 1.0
O J:HIS12 4.5 230.7 1.0
N J:CYS43 4.5 253.9 1.0
C J:HIS16 4.6 230.2 1.0
CA J:CYS43 4.7 250.2 1.0

Zinc binding site 9 out of 12 in 7u32

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Zinc binding site 9 out of 12 in the Mvv Cleaved Synaptic Complex (Csc) Intasome at 3.4 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Mvv Cleaved Synaptic Complex (Csc) Intasome at 3.4 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Zn301

b:218.9
occ:1.00
 NE2 K:HIS12 2.0 185.1 1.0
ND1 K:HIS16 2.0 170.2 1.0
CE1 K:HIS16 2.3 178.1 1.0
SG K:CYS40 2.3 197.3 1.0
SG K:CYS43 2.3 195.4 1.0
CE1 K:HIS12 2.9 185.3 1.0
CD2 K:HIS12 2.9 187.0 1.0
CB K:CYS40 2.9 203.1 1.0
CG K:HIS16 3.3 175.4 1.0
NE2 K:HIS16 3.5 180.6 1.0
CB K:CYS43 3.8 206.5 1.0
ND1 K:HIS12 3.9 186.0 1.0
CG K:HIS12 3.9 188.1 1.0
CD2 K:HIS16 4.0 177.2 1.0
CB K:HIS16 4.2 176.2 1.0
CA K:HIS16 4.3 176.8 1.0
N K:CYS43 4.3 207.7 1.0
CA K:CYS40 4.4 202.9 1.0
O K:HIS12 4.4 176.8 1.0
CA K:CYS43 4.7 208.1 1.0
O K:VAL37 5.0 199.8 1.0

Zinc binding site 10 out of 12 in 7u32

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Zinc binding site 10 out of 12 in the Mvv Cleaved Synaptic Complex (Csc) Intasome at 3.4 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of Mvv Cleaved Synaptic Complex (Csc) Intasome at 3.4 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Zn301

b:111.9
occ:1.00
 ND1 M:HIS16 2.0 311.8 1.0
NE2 M:HIS12 2.0 311.1 1.0
SG M:CYS40 2.3 336.8 1.0
SG M:CYS43 2.3 337.6 1.0
CE1 M:HIS12 2.9 314.1 1.0
CE1 M:HIS16 2.9 313.7 1.0
CD2 M:HIS12 3.0 311.7 1.0
CG M:HIS16 3.1 314.1 1.0
CB M:CYS40 3.4 338.6 1.0
CB M:HIS16 3.5 315.4 1.0
CA M:HIS16 3.7 314.1 1.0
ND1 M:HIS12 3.9 314.3 1.0
CB M:CYS43 3.9 356.7 1.0
CG M:HIS12 4.0 314.0 1.0
NE2 M:HIS16 4.0 311.7 1.0
CD2 M:HIS16 4.2 312.2 1.0
C M:HIS16 4.4 308.8 1.0
O M:HIS12 4.5 315.1 1.0
N M:CYS43 4.6 367.7 1.0
O M:GLN17 4.7 291.3 1.0
CA M:CYS43 4.8 368.5 1.0
CA M:CYS40 4.8 340.7 1.0
N M:HIS16 4.8 314.6 1.0
O M:HIS16 4.9 307.1 1.0

Reference:

A.Ballandras-Colas, V.Chivukula, D.T.Gruszka, Z.Shan, P.K.Singh, V.E.Pye, R.K.Mclean, G.J.Bedwell, W.Li, A.Nans, N.J.Cook, H.J.Fadel, E.M.Poeschla, D.J.Griffiths, J.Vargas, I.A.Taylor, D.Lyumkis, H.Yardimci, A.N.Engelman, P.Cherepanov. Multivalent Interactions Essential For Lentiviral Integrase Function. Nat Commun V. 13 2416 2022.
ISSN: ESSN 2041-1723
PubMed: 35504909
DOI: 10.1038/S41467-022-29928-8
Page generated: Wed Oct 30 11:50:34 2024

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