Zinc in PDB 7m4v: A. Baumannii Ribosome-Eravacycline Complex: 50S

Other elements in 7m4v:

The structure of A. Baumannii Ribosome-Eravacycline Complex: 50S also contains other interesting chemical elements:

Fluorine (F) 2 atoms
Magnesium (Mg) 159 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the A. Baumannii Ribosome-Eravacycline Complex: 50S (pdb code 7m4v). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the A. Baumannii Ribosome-Eravacycline Complex: 50S, PDB code: 7m4v:

Zinc binding site 1 out of 1 in 7m4v

Go back to Zinc Binding Sites List in 7m4v
Zinc binding site 1 out of 1 in the A. Baumannii Ribosome-Eravacycline Complex: 50S


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of A. Baumannii Ribosome-Eravacycline Complex: 50S within 5.0Å range:
probe atom residue distance (Å) B Occ
3:Zn101

b:0.0
occ:1.00
ND1 3:HIS33 2.1 0.0 1.0
SG 3:CYS27 2.3 0.0 1.0
SG 3:CYS11 2.3 0.0 1.0
SG 3:CYS14 2.3 0.0 1.0
CE1 3:HIS33 3.0 0.0 1.0
CG 3:HIS33 3.1 0.0 1.0
CB 3:CYS27 3.4 0.0 1.0
CB 3:HIS33 3.5 0.0 1.0
CB 3:CYS11 3.8 0.0 1.0
CB 3:CYS14 3.8 0.0 1.0
N 3:CYS11 3.9 0.0 1.0
N 3:CYS14 4.0 0.0 1.0
NE2 3:HIS33 4.2 0.0 1.0
CA 3:CYS14 4.2 0.0 1.0
C 3:SER13 4.2 0.0 1.0
CD2 3:HIS33 4.2 0.0 1.0
CA 3:CYS11 4.3 0.0 1.0
CB 3:ILE10 4.4 0.0 1.0
CA 3:CYS27 4.5 0.0 1.0
O 3:CYS11 4.5 0.0 1.0
O 3:SER13 4.5 0.0 1.0
CB 3:SER13 4.6 0.0 1.0
CB 3:GLU30 4.6 0.0 1.0
C 3:CYS11 4.6 0.0 1.0
C 3:ILE10 4.7 0.0 1.0
N 3:GLU30 4.8 0.0 1.0
CA 3:SER13 4.8 0.0 1.0
CG2 3:ILE10 4.8 0.0 1.0
N 3:SER13 4.8 0.0 1.0
O 3:GLU30 4.8 0.0 1.0
CA 3:ILE10 4.9 0.0 1.0
N 3:ILE10 4.9 0.0 1.0
CA 3:HIS33 5.0 0.0 1.0

Reference:

Z.Zhang, C.E.Morgan, R.A.Bonomo, E.W.Yu. Cryo-Em Determination of Eravacycline-Bound Structures of the Ribosome and the Multidrug Efflux Pump Adej of Acinetobacter Baumannii To Be Published.
Page generated: Mon Jul 12 17:23:42 2021

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