Zinc in PDB 7a1g: Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex

Other elements in 7a1g:

The structure of Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex also contains other interesting chemical elements:

Magnesium (Mg) 80 atoms
Iron (Fe) 8 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex (pdb code 7a1g). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex, PDB code: 7a1g:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 7a1g

Go back to Zinc Binding Sites List in 7a1g
Zinc binding site 1 out of 2 in the Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Zn101

b:27.9
occ:1.00
SG M:CYS39 2.3 5.0 1.0
SG M:CYS24 2.3 4.7 1.0
SG M:CYS42 2.3 5.0 1.0
SG M:CYS21 2.3 5.0 1.0
CB M:CYS42 3.1 5.0 1.0
CB M:CYS24 3.2 4.7 1.0
CB M:CYS39 3.3 5.0 1.0
CB M:CYS21 3.4 5.0 1.0
N M:CYS24 3.8 4.7 1.0
N M:CYS39 4.0 5.0 1.0
CA M:CYS24 4.0 4.7 1.0
CA M:CYS39 4.2 5.0 1.0
CA M:CYS42 4.3 5.0 1.0
N M:CYS42 4.5 5.0 1.0
CB M:VAL23 4.5 6.6 1.0
O2' 2:G1433 4.6 5.0 1.0
C M:CYS24 4.7 4.7 1.0
C M:VAL23 4.8 6.6 1.0
C M:CYS39 4.8 5.0 1.0
O M:CYS39 4.8 5.0 1.0
CA M:CYS21 4.8 5.0 1.0
CG2 M:ILE38 4.9 4.0 1.0
N3 2:G1433 5.0 5.0 1.0
N2 2:G1433 5.0 5.0 1.0

Zinc binding site 2 out of 2 in 7a1g

Go back to Zinc Binding Sites List in 7a1g
Zinc binding site 2 out of 2 in the Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
N:Zn201

b:37.3
occ:1.00
SG N:CYS144 2.3 16.4 1.0
SG N:CYS126 2.3 22.5 1.0
CB N:CYS144 3.4 16.4 1.0
SG N:CYS141 3.4 19.8 1.0
CB N:CYS126 3.5 22.5 1.0
SG N:CYS121 3.8 24.2 1.0
CG2 N:VAL130 3.9 14.8 1.0
N N:CYS144 4.1 16.4 1.0
CE N:LYS143 4.2 19.0 1.0
ND2 N:ASN123 4.2 23.0 1.0
NZ N:LYS143 4.3 19.0 1.0
CG1 N:VAL130 4.3 14.8 1.0
CA N:CYS144 4.4 16.4 1.0
CB N:LYS143 4.5 19.0 1.0
C N:LYS143 4.5 19.0 1.0
CB N:VAL130 4.6 14.8 1.0
CG N:ASN123 4.7 23.0 1.0
CA N:CYS126 4.8 22.5 1.0
CG N:LYS143 4.9 19.0 1.0
CD N:LYS143 4.9 19.0 1.0
CB N:CYS141 4.9 19.8 1.0
CB N:ASN123 4.9 23.0 1.0
CA N:LYS143 5.0 19.0 1.0
O N:LYS143 5.0 19.0 1.0

Reference:

H.Kratzat, T.Mackens-Kiani, A.Ameismeier, J.Cheng, E.Dacheux, A.Namane, O.Berninghausen, M.Fromont-Racine, T.Becker, R.Beckmann. Structural Inventory of Native Ribosomal ABCE1-43S Pre-Initiation Complexes To Be Published.
Page generated: Wed Dec 16 13:33:21 2020

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