Zinc in PDB 6zxw: Structure of Archaeoglobus Fulgidus TRM11-TRM112 M2G10 Trna Methyltransferase Complex Bound to Sinefungin

The structure of Structure of Archaeoglobus Fulgidus TRM11-TRM112 M2G10 Trna Methyltransferase Complex Bound to Sinefungin, PDB code: 6zxw was solved by M.Graille, C.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.55 / 2.19
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	75.360, 92.940, 101.400, 90.00, 90.00, 90.00
R / Rfree (%)	19.8 / 21.7

The binding sites of Zinc atom in the Structure of Archaeoglobus Fulgidus TRM11-TRM112 M2G10 Trna Methyltransferase Complex Bound to Sinefungin (pdb code 6zxw). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of Archaeoglobus Fulgidus TRM11-TRM112 M2G10 Trna Methyltransferase Complex Bound to Sinefungin, PDB code: 6zxw:

Zinc binding site 1 out of 1 in the Structure of Archaeoglobus Fulgidus TRM11-TRM112 M2G10 Trna Methyltransferase Complex Bound to Sinefungin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Archaeoglobus Fulgidus TRM11-TRM112 M2G10 Trna Methyltransferase Complex Bound to Sinefungin within 5.0Å range: probe atom residue distance (Å) B Occ H:Zn101 b:0.6 occ:1.00 SG H:CYS14 2.3 93.8 1.0 SG H:CYS37 2.4 0.1 1.0 CB H:CYS40 2.5 0.2 1.0 SG H:CYS11 2.5 91.8 1.0 CB H:CYS37 3.0 0.2 1.0 CB H:CYS11 3.2 87.3 1.0 SG H:CYS40 3.3 0.7 1.0 N H:CYS40 3.4 0.7 1.0 CA H:CYS40 3.5 1.0 1.0 CB H:CYS14 3.8 90.4 1.0 N H:CYS14 4.1 91.5 1.0 C H:CYS40 4.4 0.9 1.0 N H:ARG41 4.4 0.1 1.0 CB H:ALA42 4.5 0.8 1.0 CA H:CYS37 4.5 0.6 1.0 CA H:CYS14 4.5 91.2 1.0 CB H:LEU13 4.6 89.7 1.0 C H:SER39 4.7 0.0 1.0 CA H:CYS11 4.7 86.3 1.0 N H:ALA42 4.7 0.2 1.0 CB H:SER16 4.9 0.0 1.0 CB H:SER39 4.9 0.8 1.0 N H:SER39 5.0 0.1 1.0

C.Wang, N.V.Tran, V.Jactel, V.Guerineau, M.Graille. Functional and Structural Characterization of the TRM11-TRM112 M2G10 Trna Methyltransferase Complex Nucleic Acids Res. 2020.
ISSN: ESSN 1362-4962