Zinc in PDB 6zif: The Structure of A Cytosolic Copper Storage Protein From Methylocystis Sp. Strain Rockwell (Atcc 49242)

The structure of The Structure of A Cytosolic Copper Storage Protein From Methylocystis Sp. Strain Rockwell (Atcc 49242), PDB code: 6zif was solved by A.Basle, J.Lee, C.Dennison, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.77 / 2.20
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	60.76, 60.76, 231.93, 90, 90, 90
R / Rfree (%)	21.1 / 27

The structure of The Structure of A Cytosolic Copper Storage Protein From Methylocystis Sp. Strain Rockwell (Atcc 49242) also contains other interesting chemical elements:

Copper

(Cu)

68 atoms

The binding sites of Zinc atom in the The Structure of A Cytosolic Copper Storage Protein From Methylocystis Sp. Strain Rockwell (Atcc 49242) (pdb code 6zif). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the The Structure of A Cytosolic Copper Storage Protein From Methylocystis Sp. Strain Rockwell (Atcc 49242), PDB code: 6zif:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the The Structure of A Cytosolic Copper Storage Protein From Methylocystis Sp. Strain Rockwell (Atcc 49242)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Structure of A Cytosolic Copper Storage Protein From Methylocystis Sp. Strain Rockwell (Atcc 49242) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn218 b:92.1 occ:1.00 OD2 B:ASP73 2.2 79.2 1.0 NE2 A:HIS69 2.3 79.7 1.0 NE2 B:HIS69 2.3 96.6 1.0 OD2 A:ASP73 2.4 52.4 1.0 CD2 B:HIS69 2.4 81.0 1.0 CD2 A:HIS69 2.5 76.9 1.0 CG B:ASP73 3.0 60.8 1.0 CG A:ASP73 3.1 53.3 1.0 OD1 A:ASP73 3.1 56.4 1.0 OD1 B:ASP73 3.2 56.4 1.0 CE1 A:HIS69 3.6 83.9 1.0 CE1 B:HIS69 3.6 103.6 1.0 CG B:HIS69 3.7 75.4 1.0 CG A:HIS69 3.9 70.2 1.0 ND1 B:HIS69 4.3 98.5 1.0 ND1 A:HIS69 4.3 81.7 1.0 CB B:ASP73 4.4 51.9 1.0 O B:HIS69 4.4 55.9 1.0 CB A:ASP73 4.5 51.2 1.0 O A:HIS69 4.6 41.6 1.0 OE2 B:GLU72 4.6 88.4 1.0 OE2 A:GLU72 4.6 116.7 1.0 C B:HIS69 4.9 52.5 1.0 CB B:HIS69 4.9 55.1 1.0

Zinc binding site 2 out of 2 in the The Structure of A Cytosolic Copper Storage Protein From Methylocystis Sp. Strain Rockwell (Atcc 49242)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Structure of A Cytosolic Copper Storage Protein From Methylocystis Sp. Strain Rockwell (Atcc 49242) within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn218 b:71.7 occ:1.00 OD2 D:ASP73 2.0 77.6 1.0 OD2 C:ASP73 2.2 53.2 1.0 NE2 C:HIS69 2.5 70.3 1.0 CD2 C:HIS69 2.6 66.0 1.0 NE2 D:HIS69 2.7 79.6 1.0 CD2 D:HIS69 2.7 74.4 1.0 CG D:ASP73 2.8 62.7 1.0 CG C:ASP73 3.0 50.5 1.0 OD1 D:ASP73 3.1 73.1 1.0 OD1 C:ASP73 3.1 64.1 1.0 CE1 C:HIS69 3.8 79.5 1.0 CG C:HIS69 4.0 61.1 1.0 CE1 D:HIS69 4.0 79.5 1.0 CG D:HIS69 4.1 76.2 1.0 CB D:ASP73 4.2 53.5 1.0 CB C:ASP73 4.4 46.7 1.0 ND1 C:HIS69 4.5 71.6 1.0 O C:HIS69 4.6 43.0 1.0 O D:HIS69 4.6 52.5 1.0 ND1 D:HIS69 4.7 81.2 1.0 OE2 C:GLU72 4.9 94.9 1.0 OE2 D:GLU72 5.0 117.6 1.0

J.Lee, A.Basle, C.Dennison. The Importance of Sites at the Entrance of A Copper Storage Protein For Cu(I) Binding and Removal To Be Published.