Zinc in PDB 6zga: Copii on Membranes, Inner Coat

The structure of Copii on Membranes, Inner Coat also contains other interesting chemical elements:

Magnesium

(Mg)

2 atoms

The binding sites of Zinc atom in the Copii on Membranes, Inner Coat (pdb code 6zga). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Copii on Membranes, Inner Coat, PDB code: 6zga:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Copii on Membranes, Inner Coat


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Copii on Membranes, Inner Coat within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn801 b:191.3 occ:1.00 SG A:CYS61 2.3 115.0 1.0 SG A:CYS80 2.3 121.8 1.0 SG A:CYS83 2.3 120.7 1.0 SG A:CYS56 2.3 113.4 1.0 CB A:CYS61 2.9 115.0 1.0 CB A:CYS83 3.3 120.7 1.0 CB A:CYS56 3.4 113.4 1.0 OG A:SER63 3.6 105.9 1.0 CB A:CYS80 3.6 121.8 1.0 N A:CYS83 3.8 120.7 1.0 CA A:CYS83 4.2 120.7 1.0 CA A:CYS61 4.4 115.0 1.0 N A:LYS62 4.6 100.3 1.0 CB A:ILE82 4.6 103.3 1.0 CB A:SER63 4.7 105.9 1.0 N A:SER63 4.7 105.9 1.0 C A:CYS61 4.7 115.0 1.0 C A:ILE82 4.8 103.3 1.0 CA A:CYS56 4.8 113.4 1.0 N A:GLY58 4.8 101.5 1.0 CH2 A:TRP78 4.9 109.3 1.0 CG2 A:ILE82 4.9 103.3 1.0

Zinc binding site 2 out of 4 in the Copii on Membranes, Inner Coat


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Copii on Membranes, Inner Coat within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1001 b:185.1 occ:1.00 SG B:CYS256 2.3 167.7 1.0 SG B:CYS253 2.3 163.3 1.0 SG B:CYS234 2.3 154.9 1.0 SG B:CYS231 2.3 141.5 1.0 CB B:CYS253 2.8 163.3 1.0 CB B:CYS256 3.0 167.7 1.0 CB B:CYS231 3.5 141.5 1.0 N B:CYS234 3.8 154.9 1.0 OG B:SER236 3.8 147.7 1.0 N B:CYS256 3.9 167.7 1.0 CB B:CYS234 3.9 154.9 1.0 CB B:ARG233 4.0 156.1 1.0 CA B:CYS256 4.0 167.7 1.0 CB B:PHE255 4.2 158.3 1.0 CA B:CYS253 4.3 163.3 1.0 CA B:CYS234 4.3 154.9 1.0 CB B:SER236 4.5 147.7 1.0 C B:PHE255 4.6 158.3 1.0 CG B:ARG233 4.6 156.1 1.0 C B:ARG233 4.7 156.1 1.0 CA B:ARG233 4.7 156.1 1.0 C B:CYS234 4.7 154.9 1.0 C B:CYS256 4.8 167.7 1.0 N B:ARG233 4.8 156.1 1.0 CA B:CYS231 4.8 141.5 1.0 CA B:PHE255 4.9 158.3 1.0 C B:CYS253 5.0 163.3 1.0

Zinc binding site 3 out of 4 in the Copii on Membranes, Inner Coat


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Copii on Membranes, Inner Coat within 5.0Å range: probe atom residue distance (Å) B Occ E:Zn801 b:202.1 occ:1.00 SG E:CYS61 2.3 139.1 1.0 SG E:CYS80 2.3 151.9 1.0 SG E:CYS56 2.3 150.5 1.0 SG E:CYS83 2.3 165.0 1.0 CB E:CYS80 3.1 151.9 1.0 CB E:CYS61 3.2 139.1 1.0 CB E:CYS56 3.5 150.5 1.0 CB E:CYS83 3.9 165.0 1.0 N E:CYS83 4.0 165.0 1.0 CB E:ILE82 4.2 141.5 1.0 N E:GLY58 4.3 138.5 1.0 CA E:CYS83 4.5 165.0 1.0 CA E:GLY58 4.5 138.5 1.0 CB E:SER63 4.6 139.0 1.0 CA E:CYS61 4.6 139.1 1.0 CA E:CYS80 4.6 151.9 1.0 CG2 E:ILE82 4.6 141.5 1.0 CA E:CYS56 4.8 150.5 1.0 C E:ILE82 4.8 141.5 1.0 CZ3 E:TRP78 4.9 148.4 1.0 N E:SER57 4.9 147.8 1.0 CA E:ILE82 5.0 141.5 1.0 C E:CYS61 5.0 139.1 1.0

Zinc binding site 4 out of 4 in the Copii on Membranes, Inner Coat


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Copii on Membranes, Inner Coat within 5.0Å range: probe atom residue distance (Å) B Occ F:Zn1001 b:297.4 occ:1.00 SG F:CYS253 2.3 280.4 1.0 SG F:CYS256 2.3 283.7 1.0 SG F:CYS234 2.3 285.3 1.0 SG F:CYS231 2.3 269.6 1.0 CB F:CYS253 2.7 280.4 1.0 CB F:CYS256 3.4 283.7 1.0 CB F:CYS231 3.5 269.6 1.0 CB F:CYS234 4.0 285.3 1.0 N F:CYS256 4.0 283.7 1.0 N F:CYS234 4.1 285.3 1.0 OG F:SER236 4.2 281.2 1.0 CA F:CYS253 4.2 280.4 1.0 CA F:CYS256 4.3 283.7 1.0 CB F:SER236 4.4 281.2 1.0 CB F:PHE255 4.4 276.3 1.0 O F:LEU258 4.5 270.8 1.0 CA F:CYS234 4.6 285.3 1.0 CB F:ARG233 4.7 289.6 1.0 CA F:CYS231 4.9 269.6 1.0 C F:CYS256 4.9 283.7 1.0 N F:CYS253 5.0 280.4 1.0

G.Zanetti, G.Zanetti, J.Hutchings, A.C.M.Cheung. N/A N/A.