Zinc in PDB 6zga: Copii on Membranes, Inner Coat
Other elements in 6zga:
The structure of Copii on Membranes, Inner Coat also contains other interesting chemical elements:
Zinc Binding Sites:
The binding sites of Zinc atom in the Copii on Membranes, Inner Coat
(pdb code 6zga). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the
Copii on Membranes, Inner Coat, PDB code: 6zga:
Jump to Zinc binding site number:
1;
2;
3;
4;
Zinc binding site 1 out
of 4 in 6zga
Go back to
Zinc Binding Sites List in 6zga
Zinc binding site 1 out
of 4 in the Copii on Membranes, Inner Coat
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Copii on Membranes, Inner Coat within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn801
b:191.3
occ:1.00
|
SG
|
A:CYS61
|
2.3
|
115.0
|
1.0
|
SG
|
A:CYS80
|
2.3
|
121.8
|
1.0
|
SG
|
A:CYS83
|
2.3
|
120.7
|
1.0
|
SG
|
A:CYS56
|
2.3
|
113.4
|
1.0
|
CB
|
A:CYS61
|
2.9
|
115.0
|
1.0
|
CB
|
A:CYS83
|
3.3
|
120.7
|
1.0
|
CB
|
A:CYS56
|
3.4
|
113.4
|
1.0
|
OG
|
A:SER63
|
3.6
|
105.9
|
1.0
|
CB
|
A:CYS80
|
3.6
|
121.8
|
1.0
|
N
|
A:CYS83
|
3.8
|
120.7
|
1.0
|
CA
|
A:CYS83
|
4.2
|
120.7
|
1.0
|
CA
|
A:CYS61
|
4.4
|
115.0
|
1.0
|
N
|
A:LYS62
|
4.6
|
100.3
|
1.0
|
CB
|
A:ILE82
|
4.6
|
103.3
|
1.0
|
CB
|
A:SER63
|
4.7
|
105.9
|
1.0
|
N
|
A:SER63
|
4.7
|
105.9
|
1.0
|
C
|
A:CYS61
|
4.7
|
115.0
|
1.0
|
C
|
A:ILE82
|
4.8
|
103.3
|
1.0
|
CA
|
A:CYS56
|
4.8
|
113.4
|
1.0
|
N
|
A:GLY58
|
4.8
|
101.5
|
1.0
|
CH2
|
A:TRP78
|
4.9
|
109.3
|
1.0
|
CG2
|
A:ILE82
|
4.9
|
103.3
|
1.0
|
|
Zinc binding site 2 out
of 4 in 6zga
Go back to
Zinc Binding Sites List in 6zga
Zinc binding site 2 out
of 4 in the Copii on Membranes, Inner Coat
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Copii on Membranes, Inner Coat within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn1001
b:185.1
occ:1.00
|
SG
|
B:CYS256
|
2.3
|
167.7
|
1.0
|
SG
|
B:CYS253
|
2.3
|
163.3
|
1.0
|
SG
|
B:CYS234
|
2.3
|
154.9
|
1.0
|
SG
|
B:CYS231
|
2.3
|
141.5
|
1.0
|
CB
|
B:CYS253
|
2.8
|
163.3
|
1.0
|
CB
|
B:CYS256
|
3.0
|
167.7
|
1.0
|
CB
|
B:CYS231
|
3.5
|
141.5
|
1.0
|
N
|
B:CYS234
|
3.8
|
154.9
|
1.0
|
OG
|
B:SER236
|
3.8
|
147.7
|
1.0
|
N
|
B:CYS256
|
3.9
|
167.7
|
1.0
|
CB
|
B:CYS234
|
3.9
|
154.9
|
1.0
|
CB
|
B:ARG233
|
4.0
|
156.1
|
1.0
|
CA
|
B:CYS256
|
4.0
|
167.7
|
1.0
|
CB
|
B:PHE255
|
4.2
|
158.3
|
1.0
|
CA
|
B:CYS253
|
4.3
|
163.3
|
1.0
|
CA
|
B:CYS234
|
4.3
|
154.9
|
1.0
|
CB
|
B:SER236
|
4.5
|
147.7
|
1.0
|
C
|
B:PHE255
|
4.6
|
158.3
|
1.0
|
CG
|
B:ARG233
|
4.6
|
156.1
|
1.0
|
C
|
B:ARG233
|
4.7
|
156.1
|
1.0
|
CA
|
B:ARG233
|
4.7
|
156.1
|
1.0
|
C
|
B:CYS234
|
4.7
|
154.9
|
1.0
|
C
|
B:CYS256
|
4.8
|
167.7
|
1.0
|
N
|
B:ARG233
|
4.8
|
156.1
|
1.0
|
CA
|
B:CYS231
|
4.8
|
141.5
|
1.0
|
CA
|
B:PHE255
|
4.9
|
158.3
|
1.0
|
C
|
B:CYS253
|
5.0
|
163.3
|
1.0
|
|
Zinc binding site 3 out
of 4 in 6zga
Go back to
Zinc Binding Sites List in 6zga
Zinc binding site 3 out
of 4 in the Copii on Membranes, Inner Coat
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of Copii on Membranes, Inner Coat within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Zn801
b:202.1
occ:1.00
|
SG
|
E:CYS61
|
2.3
|
139.1
|
1.0
|
SG
|
E:CYS80
|
2.3
|
151.9
|
1.0
|
SG
|
E:CYS56
|
2.3
|
150.5
|
1.0
|
SG
|
E:CYS83
|
2.3
|
165.0
|
1.0
|
CB
|
E:CYS80
|
3.1
|
151.9
|
1.0
|
CB
|
E:CYS61
|
3.2
|
139.1
|
1.0
|
CB
|
E:CYS56
|
3.5
|
150.5
|
1.0
|
CB
|
E:CYS83
|
3.9
|
165.0
|
1.0
|
N
|
E:CYS83
|
4.0
|
165.0
|
1.0
|
CB
|
E:ILE82
|
4.2
|
141.5
|
1.0
|
N
|
E:GLY58
|
4.3
|
138.5
|
1.0
|
CA
|
E:CYS83
|
4.5
|
165.0
|
1.0
|
CA
|
E:GLY58
|
4.5
|
138.5
|
1.0
|
CB
|
E:SER63
|
4.6
|
139.0
|
1.0
|
CA
|
E:CYS61
|
4.6
|
139.1
|
1.0
|
CA
|
E:CYS80
|
4.6
|
151.9
|
1.0
|
CG2
|
E:ILE82
|
4.6
|
141.5
|
1.0
|
CA
|
E:CYS56
|
4.8
|
150.5
|
1.0
|
C
|
E:ILE82
|
4.8
|
141.5
|
1.0
|
CZ3
|
E:TRP78
|
4.9
|
148.4
|
1.0
|
N
|
E:SER57
|
4.9
|
147.8
|
1.0
|
CA
|
E:ILE82
|
5.0
|
141.5
|
1.0
|
C
|
E:CYS61
|
5.0
|
139.1
|
1.0
|
|
Zinc binding site 4 out
of 4 in 6zga
Go back to
Zinc Binding Sites List in 6zga
Zinc binding site 4 out
of 4 in the Copii on Membranes, Inner Coat
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of Copii on Membranes, Inner Coat within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Zn1001
b:297.4
occ:1.00
|
SG
|
F:CYS253
|
2.3
|
280.4
|
1.0
|
SG
|
F:CYS256
|
2.3
|
283.7
|
1.0
|
SG
|
F:CYS234
|
2.3
|
285.3
|
1.0
|
SG
|
F:CYS231
|
2.3
|
269.6
|
1.0
|
CB
|
F:CYS253
|
2.7
|
280.4
|
1.0
|
CB
|
F:CYS256
|
3.4
|
283.7
|
1.0
|
CB
|
F:CYS231
|
3.5
|
269.6
|
1.0
|
CB
|
F:CYS234
|
4.0
|
285.3
|
1.0
|
N
|
F:CYS256
|
4.0
|
283.7
|
1.0
|
N
|
F:CYS234
|
4.1
|
285.3
|
1.0
|
OG
|
F:SER236
|
4.2
|
281.2
|
1.0
|
CA
|
F:CYS253
|
4.2
|
280.4
|
1.0
|
CA
|
F:CYS256
|
4.3
|
283.7
|
1.0
|
CB
|
F:SER236
|
4.4
|
281.2
|
1.0
|
CB
|
F:PHE255
|
4.4
|
276.3
|
1.0
|
O
|
F:LEU258
|
4.5
|
270.8
|
1.0
|
CA
|
F:CYS234
|
4.6
|
285.3
|
1.0
|
CB
|
F:ARG233
|
4.7
|
289.6
|
1.0
|
CA
|
F:CYS231
|
4.9
|
269.6
|
1.0
|
C
|
F:CYS256
|
4.9
|
283.7
|
1.0
|
N
|
F:CYS253
|
5.0
|
280.4
|
1.0
|
|
Reference:
G.Zanetti,
G.Zanetti,
J.Hutchings,
A.C.M.Cheung.
N/A N/A.
Page generated: Tue Oct 29 15:40:55 2024
|