Zinc in PDB 6zfb: Structure of the B. Subtilis Rna Polymerase in Complex with Held (Dimer)

All present enzymatic activity of Structure of the B. Subtilis Rna Polymerase in Complex with Held (Dimer):
2.7.7.6; 3.6.4.12;

The binding sites of Zinc atom in the Structure of the B. Subtilis Rna Polymerase in Complex with Held (Dimer) (pdb code 6zfb). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of the B. Subtilis Rna Polymerase in Complex with Held (Dimer), PDB code: 6zfb:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Structure of the B. Subtilis Rna Polymerase in Complex with Held (Dimer)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the B. Subtilis Rna Polymerase in Complex with Held (Dimer) within 5.0Å range: probe atom residue distance (Å) B Occ Y:Zn1201 b:0.9 occ:1.00 SG Y:CYS818 2.4 55.6 1.0 CB Y:CYS902 2.5 46.1 1.0 SG Y:CYS902 2.5 46.1 1.0 SG Y:CYS899 2.6 51.6 1.0 N Y:CYS899 2.8 51.6 1.0 CB Y:CYS899 3.0 51.6 1.0 CB Y:CYS818 3.2 55.6 1.0 SG Y:CYS892 3.3 61.4 1.0 CA Y:CYS899 3.4 51.6 1.0 CA Y:CYS902 3.7 46.1 1.0 C Y:VAL898 3.9 54.9 1.0 N Y:CYS902 3.9 46.1 1.0 CA Y:VAL898 4.0 54.9 1.0 CB Y:CYS892 4.0 61.4 1.0 C Y:CYS899 4.1 51.6 1.0 O Y:CYS899 4.2 51.6 1.0 CB Y:VAL898 4.2 54.9 1.0 NH2 Y:ARG887 4.3 49.0 1.0 CA Y:CYS818 4.4 55.6 1.0 N Y:CYS818 4.4 55.6 1.0 C Y:CYS902 4.6 46.1 1.0 CA Y:CYS892 4.8 61.4 1.0 CG1 Y:VAL898 4.9 54.9 1.0 O Y:VAL898 5.0 54.9 1.0

Zinc binding site 2 out of 2 in the Structure of the B. Subtilis Rna Polymerase in Complex with Held (Dimer)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of the B. Subtilis Rna Polymerase in Complex with Held (Dimer) within 5.0Å range: probe atom residue distance (Å) B Occ y:Zn1201 b:0.7 occ:1.00 N y:CYS899 2.5 89.9 1.0 SG y:CYS818 2.5 74.0 1.0 CB y:CYS902 2.6 75.4 1.0 SG y:CYS899 2.8 89.9 1.0 SG y:CYS902 2.9 75.4 1.0 CB y:CYS899 3.0 89.9 1.0 SG y:CYS892 3.2 81.8 1.0 CA y:CYS899 3.2 89.9 1.0 C y:VAL898 3.5 91.0 1.0 CB y:CYS818 3.5 74.0 1.0 CA y:VAL898 3.6 91.0 1.0 CB y:VAL898 3.8 91.0 1.0 CA y:CYS902 3.9 75.4 1.0 CB y:CYS892 3.9 81.8 1.0 C y:CYS899 4.0 89.9 1.0 O y:CYS899 4.0 89.9 1.0 N y:CYS902 4.1 75.4 1.0 CG1 y:VAL898 4.6 91.0 1.0 O y:VAL898 4.6 91.0 1.0 C y:CYS902 4.6 75.4 1.0 CA y:CYS818 4.6 74.0 1.0 N y:CYS818 4.7 74.0 1.0 NH2 y:ARG887 4.7 72.2 1.0 CA y:CYS892 4.8 81.8 1.0 CB y:THR894 4.9 93.0 1.0 CG2 y:THR894 4.9 93.0 1.0 N y:VAL898 5.0 91.0 1.0

H.-P.Pei, T.Hilal, Z.A.Chen, Y.-H.Huang, Y.Gao, N.Said, B.Loll, J.Rappsilber, G.A.Belogurov, I.Artsimovitch, M.C.Wahl. Structural Basis of Energy-Status-Dependent Rna Polymerase Recycling and Hibernation To Be Published.