Atomistry » Zinc » PDB 6z86-6zkd » 6z9q
Atomistry »
  Zinc »
    PDB 6z86-6zkd »
      6z9q »

Zinc in PDB 6z9q: Transcription Termination Intermediate Complex 2

Enzymatic activity of Transcription Termination Intermediate Complex 2

All present enzymatic activity of Transcription Termination Intermediate Complex 2:
2.7.7.6;

Other elements in 6z9q:

The structure of Transcription Termination Intermediate Complex 2 also contains other interesting chemical elements:

Fluorine (F) 15 atoms
Magnesium (Mg) 6 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Transcription Termination Intermediate Complex 2 (pdb code 6z9q). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Transcription Termination Intermediate Complex 2, PDB code: 6z9q:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6z9q

Go back to Zinc Binding Sites List in 6z9q
Zinc binding site 1 out of 2 in the Transcription Termination Intermediate Complex 2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Transcription Termination Intermediate Complex 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
Y:Zn1502

b:0.3
occ:1.00
SG Y:CYS85 2.4 0.6 1.0
SG Y:CYS72 2.4 0.2 1.0
SG Y:CYS88 2.4 0.8 1.0
SG Y:CYS70 2.4 0.9 1.0
CB Y:CYS85 2.9 0.6 1.0
CB Y:LYS74 3.7 0.2 1.0
CB Y:CYS72 3.7 0.2 1.0
CB Y:CYS70 3.8 0.9 1.0
OP2 L:DA25 3.9 0.1 1.0
OP1 L:DA25 4.0 0.1 1.0
N Y:LYS74 4.1 0.2 1.0
N Y:CYS72 4.2 0.2 1.0
CB Y:CYS88 4.2 0.8 1.0
P L:DA25 4.3 0.1 1.0
CA Y:CYS85 4.4 0.6 1.0
CA Y:CYS72 4.5 0.2 1.0
N Y:GLY73 4.5 0.6 1.0
CA Y:LYS74 4.5 0.2 1.0
O5' L:DA25 4.7 0.1 1.0
CG Y:LYS74 4.8 0.2 1.0
CB Y:VAL90 4.8 0.3 1.0
N Y:VAL90 4.9 0.3 1.0
C Y:CYS72 4.9 0.2 1.0
N Y:GLY89 4.9 1.0 1.0
N Y:LEU71 4.9 0.3 1.0
CG2 Y:VAL90 4.9 0.3 1.0

Zinc binding site 2 out of 2 in 6z9q

Go back to Zinc Binding Sites List in 6z9q
Zinc binding site 2 out of 2 in the Transcription Termination Intermediate Complex 2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Transcription Termination Intermediate Complex 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
Y:Zn1503

b:0.7
occ:1.00
SG Y:CYS898 2.4 0.6 1.0
SG Y:CYS895 2.5 0.6 1.0
SG Y:CYS888 2.5 1.0 1.0
CB Y:CYS814 2.5 0.8 1.0
CB Y:CYS895 2.7 0.6 1.0
SG Y:CYS814 2.8 0.8 1.0
N Y:CYS814 3.0 0.8 1.0
OG1 Y:THR890 3.3 0.4 1.0
CA Y:CYS814 3.3 0.8 1.0
CB Y:CYS898 3.7 0.6 1.0
CB Y:CYS888 3.8 1.0 1.0
C Y:ASP813 3.9 0.6 1.0
CA Y:CYS895 4.0 0.6 1.0
N Y:CYS895 4.1 0.6 1.0
OD1 Y:ASP813 4.2 0.6 1.0
CA Y:CYS888 4.2 1.0 1.0
N Y:ASP889 4.2 0.1 1.0
NH1 Y:ARG883 4.2 0.8 1.0
CA Y:ASP813 4.4 0.6 1.0
C Y:CYS814 4.6 0.8 1.0
C Y:CYS888 4.7 1.0 1.0
CB Y:THR890 4.7 0.4 1.0
N Y:THR890 4.7 0.4 1.0
O Y:ASP813 4.8 0.6 1.0
C Y:CYS895 4.9 0.6 1.0
N Y:CYS898 4.9 0.6 1.0
CA Y:CYS898 4.9 0.6 1.0
N Y:GLY815 5.0 0.6 1.0
O Y:CYS895 5.0 0.6 1.0

Reference:

N.Said, T.Hilal, B.Loll, M.C.Wahl. Snapshots Along A Factor-Mediated, Elongation Complex-Dependent Path to Transcription Termination To Be Published.
Page generated: Tue Oct 29 15:34:13 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy