Zinc in PDB 6z7o: Crystal Structure of Thioredoxin T From Drosophila Melanogaster

The structure of Crystal Structure of Thioredoxin T From Drosophila Melanogaster, PDB code: 6z7o was solved by R.Freier, E.Aragon, B.Baginski, R.Pluta, P.Martin-Malpartida, C.Torner, C.Gonzaez, M.Macias, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.67 / 2.33
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	46.090, 49.312, 54.283, 90.00, 90.00, 90.00
R / Rfree (%)	19.2 / 22.2

The binding sites of Zinc atom in the Crystal Structure of Thioredoxin T From Drosophila Melanogaster (pdb code 6z7o). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Thioredoxin T From Drosophila Melanogaster, PDB code: 6z7o:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of Thioredoxin T From Drosophila Melanogaster


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Thioredoxin T From Drosophila Melanogaster within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:28.8 occ:1.00 NE2 A:HIS105 1.9 22.0 1.0 OE2 A:GLU88 2.0 37.6 1.0 CE1 A:HIS105 2.6 27.0 1.0 CD2 A:HIS105 3.1 28.4 1.0 CD A:GLU88 3.2 48.6 1.0 ND1 A:HIS105 3.8 24.7 1.0 CG A:GLU88 3.9 53.3 1.0 CG A:HIS105 4.1 24.3 1.0 OE1 A:GLU88 4.2 50.8 1.0 CB A:GLU88 4.2 38.9 1.0 NZ A:LYS104 4.7 74.4 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of Thioredoxin T From Drosophila Melanogaster


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Thioredoxin T From Drosophila Melanogaster within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn202 b:43.0 occ:1.00 O A:HOH302 2.0 35.9 1.0 NE2 A:HIS47 2.3 37.6 1.0 O A:HOH334 3.1 47.2 1.0 CD2 A:HIS47 3.2 35.1 1.0 O A:HOH331 3.2 43.6 1.0 CE1 A:HIS47 3.3 39.8 1.0 ND1 A:HIS47 4.4 32.8 1.0 CG A:HIS47 4.4 26.1 1.0

R.Freier, E.Aragon, B.Baginski, R.Pluta, P.Martin-Malpartida, L.Ruiz, M.Condeminas, C.Gonzaez, M.Macias. Structures of the Germline-Specific Deadhead and Thioredoxin T Proteins From Drosophila Melanogaster Reveal Unique Features Among Thioredoxins Biorxiv 2020.
DOI: 10.1101/2020.07.29.226944